BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-92944
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsv1-miR-H26 MIMAT0025022 Herpes Simplex miR-H26 16 6.9
mdo-miR-7328-5p MIMAT0028658 Monodelphis domestica miR-7328-5p 14 27
mml-miR-7167-5p MIMAT0028268 Macaca mulatta miR-7167-5p 14 27
gga-miR-6596-5p MIMAT0025690 Gallus gallus miR-6596-5p 14 27
prv-miR-LLT10b MIMAT0025314 Pseudorabies virus miR-LLT10b 14 27
prv-miR-LLT10a MIMAT0025313 Pseudorabies virus miR-LLT10a 14 27
cgr-miR-615-3p MIMAT0023988 Cricetulus griseus miR-615-3p 14 27
ssc-miR-615 MIMAT0020595 Sus scrofa miR-615 14 27
rno-miR-3550 MIMAT0017808 Rattus norvegicus miR-3550 14 27
ppy-miR-615-3p MIMAT0016057 Pongo pygmaeus miR-615-3p 14 27
bmo-miR-3262 MIMAT0015446 Bombyx mori miR-3262 14 27
eca-miR-615-3p MIMAT0012977 Equus caballus miR-615-3p 14 27
bta-miR-1225-3p MIMAT0009952 Bos taurus miR-1225-3p 14 27
ptr-miR-615 MIMAT0008277 Pan troglodytes miR-615 14 27
mml-miR-615-3p MIMAT0006466 Macaca mulatta miR-615-3p 14 27
gga-miR-1648-5p MIMAT0007524 Gallus gallus miR-1648-5p 14 27
oan-miR-1351-5p MIMAT0006943 Ornithorhynchus anatinus miR-1351-5p 14 27
mmu-miR-615-3p MIMAT0003783 Mus musculus miR-615-3p 14 27
hsa-miR-615-3p MIMAT0003283 Homo sapiens miR-615-3p 14 27
>hsv1-miR-H26 MIMAT0025022 Herpes Simplex miR-H26
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggctcgg 8
||||||||
Sbjct: 1 tggctcgg 8
>mdo-miR-7328-5p MIMAT0028658 Monodelphis domestica miR-7328-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tggctcg 7
|||||||
Sbjct: 2 tggctcg 8
>mml-miR-7167-5p MIMAT0028268 Macaca mulatta miR-7167-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctcgg 8
|||||||
Sbjct: 2 ggctcgg 8
>gga-miR-6596-5p MIMAT0025690 Gallus gallus miR-6596-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 8 ggctcgg 2
>prv-miR-LLT10b MIMAT0025314 Pseudorabies virus miR-LLT10b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 7 ggctcgg 1
>prv-miR-LLT10a MIMAT0025313 Pseudorabies virus miR-LLT10a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 7 ggctcgg 1
>cgr-miR-615-3p MIMAT0023988 Cricetulus griseus miR-615-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 8 ggctcgg 2
>ssc-miR-615 MIMAT0020595 Sus scrofa miR-615
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 8 ggctcgg 2
>rno-miR-3550 MIMAT0017808 Rattus norvegicus miR-3550
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 7 ggctcgg 1
>ppy-miR-615-3p MIMAT0016057 Pongo pygmaeus miR-615-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 8 ggctcgg 2
>bmo-miR-3262 MIMAT0015446 Bombyx mori miR-3262
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctcgg 8
|||||||
Sbjct: 2 ggctcgg 8
>eca-miR-615-3p MIMAT0012977 Equus caballus miR-615-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 8 ggctcgg 2
>bta-miR-1225-3p MIMAT0009952 Bos taurus miR-1225-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 7 ggctcgg 1
>ptr-miR-615 MIMAT0008277 Pan troglodytes miR-615
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 8 ggctcgg 2
>mml-miR-615-3p MIMAT0006466 Macaca mulatta miR-615-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 8 ggctcgg 2
>gga-miR-1648-5p MIMAT0007524 Gallus gallus miR-1648-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggctcgg 8
|||||||
Sbjct: 2 ggctcgg 8
>oan-miR-1351-5p MIMAT0006943 Ornithorhynchus anatinus
miR-1351-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 7 ggctcgg 1
>mmu-miR-615-3p MIMAT0003783 Mus musculus miR-615-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 8 ggctcgg 2
>hsa-miR-615-3p MIMAT0003283 Homo sapiens miR-615-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ggctcgg 8
|||||||
Sbjct: 8 ggctcgg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 245
Number of extensions: 225
Number of successful extensions: 164
Number of sequences better than 100.0: 19
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
