BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m3*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mdv1-miR-M3-3p MIMAT0009207 Mareks disease miR-M3-3p 16 6.9
bhv5-miR-B14 MIMAT0035711 Bovine herpesvirus miR-B14 14 27
hsa-miR-7109-5p MIMAT0028115 Homo sapiens miR-7109-5p 14 27
mmu-miR-6980-5p MIMAT0027862 Mus musculus miR-6980-5p 14 27
hsa-miR-6887-5p MIMAT0027674 Homo sapiens miR-6887-5p 14 27
hsa-miR-6795-5p MIMAT0027490 Homo sapiens miR-6795-5p 14 27
hsa-miR-6752-5p MIMAT0027404 Homo sapiens miR-6752-5p 14 27
hsv1-miR-H5-5p MIMAT0015280 Herpes Simplex miR-H5-5p 14 27
gga-miR-30b-3p MIMAT0026512 Gallus gallus miR-30b-3p 14 27
>mdv1-miR-M3-3p MIMAT0009207 Mareks disease miR-M3-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tggggggt 8
||||||||
Sbjct: 1 tggggggt 8
>bhv5-miR-B14 MIMAT0035711 Bovine herpesvirus miR-B14
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggggt 8
|||||||
Sbjct: 2 ggggggt 8
>hsa-miR-7109-5p MIMAT0028115 Homo sapiens miR-7109-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggggg 7
|||||||
Sbjct: 2 tgggggg 8
>mmu-miR-6980-5p MIMAT0027862 Mus musculus miR-6980-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggggg 7
|||||||
Sbjct: 2 tgggggg 8
>hsa-miR-6887-5p MIMAT0027674 Homo sapiens miR-6887-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggggg 7
|||||||
Sbjct: 1 tgggggg 7
>hsa-miR-6795-5p MIMAT0027490 Homo sapiens miR-6795-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggggg 7
|||||||
Sbjct: 1 tgggggg 7
>hsa-miR-6752-5p MIMAT0027404 Homo sapiens miR-6752-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggggt 8
|||||||
Sbjct: 1 ggggggt 7
>hsv1-miR-H5-5p MIMAT0015280 Herpes Simplex miR-H5-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ggggggt 8
|||||||
Sbjct: 2 ggggggt 8
>gga-miR-30b-3p MIMAT0026512 Gallus gallus miR-30b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgggggg 7
|||||||
Sbjct: 2 tgggggg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 152
Number of extensions: 142
Number of successful extensions: 92
Number of sequences better than 100.0: 9
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
