BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-10*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sma-miR-8431-5p MIMAT0033566 Schistosoma mansoni miR-8431-5p 16 6.9
mghv-miR-M1-10-5p MIMAT0018166 Mouse gammaherpesvirus miR-M1-10-5p 16 6.9
eca-miR-9136 MIMAT0034687 Equus caballus miR-9136 14 27
hhi-miR-7791 MIMAT0030336 Hippoglossus hippoglossus miR-7791 14 27
mdo-miR-7328-3p MIMAT0028659 Monodelphis domestica miR-7328-3p 14 27
tca-miR-3883-5p MIMAT0018862 Tribolium castaneum miR-3883-5p 14 27
hsa-miR-3658 MIMAT0018078 Homo sapiens miR-3658 14 27
aly-miR868-3p MIMAT0017656 Arabidopsis lyrata miR868-3p 14 27
bmo-miR-2790-3p MIMAT0013688 Bombyx mori miR-2790-3p 14 27
sbi-miR1435b MIMAT0011392 Sorghum bicolor miR1435b 14 27
sbi-miR1435a MIMAT0011391 Sorghum bicolor miR1435a 14 27
hsa-miR-2116-5p MIMAT0011160 Homo sapiens miR-2116-5p 14 27
osa-miR1435 MIMAT0005986 Oryza sativa miR1435 14 27
ath-miR868-3p MIMAT0004319 Arabidopsis thaliana miR868-3p 14 27
>sma-miR-8431-5p MIMAT0033566 Schistosoma mansoni miR-8431-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 ttaagaac 8
||||||||
Sbjct: 8 ttaagaac 1
>mghv-miR-M1-10-5p MIMAT0018166 Mouse gammaherpesvirus
miR-M1-10-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 ttaagaac 8
||||||||
Sbjct: 1 ttaagaac 8
>eca-miR-9136 MIMAT0034687 Equus caballus miR-9136
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttaagaa 7
|||||||
Sbjct: 1 ttaagaa 7
>hhi-miR-7791 MIMAT0030336 Hippoglossus hippoglossus miR-7791
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttaagaa 7
|||||||
Sbjct: 7 ttaagaa 1
>mdo-miR-7328-3p MIMAT0028659 Monodelphis domestica miR-7328-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taagaac 8
|||||||
Sbjct: 1 taagaac 7
>tca-miR-3883-5p MIMAT0018862 Tribolium castaneum miR-3883-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taagaac 8
|||||||
Sbjct: 1 taagaac 7
>hsa-miR-3658 MIMAT0018078 Homo sapiens miR-3658
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttaagaa 7
|||||||
Sbjct: 2 ttaagaa 8
>aly-miR868-3p MIMAT0017656 Arabidopsis lyrata miR868-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttaagaa 7
|||||||
Sbjct: 8 ttaagaa 2
>bmo-miR-2790-3p MIMAT0013688 Bombyx mori miR-2790-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 taagaac 8
|||||||
Sbjct: 1 taagaac 7
>sbi-miR1435b MIMAT0011392 Sorghum bicolor miR1435b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttaagaa 7
|||||||
Sbjct: 8 ttaagaa 2
>sbi-miR1435a MIMAT0011391 Sorghum bicolor miR1435a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttaagaa 7
|||||||
Sbjct: 8 ttaagaa 2
>hsa-miR-2116-5p MIMAT0011160 Homo sapiens miR-2116-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 taagaac 8
|||||||
Sbjct: 8 taagaac 2
>osa-miR1435 MIMAT0005986 Oryza sativa miR1435
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttaagaa 7
|||||||
Sbjct: 8 ttaagaa 2
>ath-miR868-3p MIMAT0004319 Arabidopsis thaliana miR868-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttaagaa 7
|||||||
Sbjct: 8 ttaagaa 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 135
Number of extensions: 119
Number of successful extensions: 83
Number of sequences better than 100.0: 14
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 14
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
