BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-ul36*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
oha-miR-875-3p MIMAT0036952 Ophiophagus hannah miR-875-3p 14 20
dme-miR-4978-5p MIMAT0020210 Drosophila melanogaster miR-4978-5p 14 20
ppy-miR-875-3p MIMAT0016114 Pongo pygmaeus miR-875-3p 14 20
dvi-miR-284-5p MIMAT0032097 Drosophila virilis miR-284-5p 14 20
mml-miR-875-3p MIMAT0006518 Macaca mulatta miR-875-3p 14 20
hsa-miR-875-3p MIMAT0004923 Homo sapiens miR-875-3p 14 20
hcmv-miR-UL36-3p MIMAT0004754 Human cytomegalovirus miR-UL36-3p 14 20
dme-miR-284-5p MIMAT0020811 Drosophila melanogaster miR-284-5p 14 20
ssc-miR-9846-3p MIMAT0037065 Sus scrofa miR-9846-3p 12 80
ssc-miR-9830-5p MIMAT0037048 Sus scrofa miR-9830-5p 12 80
ssc-miR-9816-3p MIMAT0037034 Sus scrofa miR-9816-3p 12 80
rno-miR-1956-5p MIMAT0035735 Rattus norvegicus miR-1956-5p 12 80
efu-miR-7a MIMAT0035157 Eptesicus fuscus miR-7a 12 80
eca-miR-9153 MIMAT0034729 Equus caballus miR-9153 12 80
eca-miR-9146 MIMAT0034722 Equus caballus miR-9146 12 80
eca-miR-9122 MIMAT0034672 Equus caballus miR-9122 12 80
eca-miR-8934 MIMAT0034463 Equus caballus miR-8934 12 80
eca-miR-8912 MIMAT0034440 Equus caballus miR-8912 12 80
eca-miR-8911 MIMAT0034439 Equus caballus miR-8911 12 80
cfa-miR-8832 MIMAT0034325 Canis familiaris miR-8832 12 80
ssa-miR-462a-3p MIMAT0032654 Salmo salar miR-462a-3p 12 80
stu-miR8009 MIMAT0030902 Solanum tuberosum miR8009 12 80
stu-miR8008a MIMAT0030901 Solanum tuberosum miR8008a 12 80
mdo-miR-7270-3p MIMAT0028511 Monodelphis domestica miR-7270-3p 12 80
mmu-miR-7222-3p MIMAT0028413 Mus musculus miR-7222-3p 12 80
hsa-miR-7113-5p MIMAT0028123 Homo sapiens miR-7113-5p 12 80
mmu-miR-7033-5p MIMAT0027970 Mus musculus miR-7033-5p 12 80
mmu-miR-6950-5p MIMAT0027800 Mus musculus miR-6950-5p 12 80
hsa-miR-6720-5p MIMAT0027345 Homo sapiens miR-6720-5p 12 80
gga-miR-6624-3p MIMAT0025720 Gallus gallus miR-6624-3p 12 80
gga-miR-6587-3p MIMAT0025679 Gallus gallus miR-6587-3p 12 80
hsa-miR-6512-3p MIMAT0025481 Homo sapiens miR-6512-3p 12 80
mmu-miR-6379 MIMAT0025125 Mus musculus miR-6379 12 80
ppe-miR6258 MIMAT0027271 Prunus persica miR6258 12 80
ppy-miR-151b MIMAT0024394 Pongo pygmaeus miR-151b 12 80
cgr-miR-1956 MIMAT0023830 Cricetulus griseus miR-1956 12 80
cgr-miR-1903 MIMAT0023820 Cricetulus griseus miR-1903 12 80
ame-miR-6065 MIMAT0023690 Apis mellifera miR-6065 12 80
asu-miR-87b-5p MIMAT0021483 Ascaris suum miR-87b-5p 12 80
dme-miR-4982-3p MIMAT0020216 Drosophila melanogaster miR-4982-3p 12 80
dme-miR-4976-5p MIMAT0020206 Drosophila melanogaster miR-4976-5p 12 80
hsa-miR-4673 MIMAT0019755 Homo sapiens miR-4673 12 80
hsa-miR-4638-3p MIMAT0019696 Homo sapiens miR-4638-3p 12 80
pma-miR-145-3p MIMAT0019477 Petromyzon marinus miR-145-3p 12 80
vvi-miR3625-5p MIMAT0018013 Vitis vinifera miR3625-5p 12 80
hsa-miR-4308 MIMAT0016861 Homo sapiens miR-4308 12 80
rno-miR-3561-3p MIMAT0017831 Rattus norvegicus miR-3561-3p 12 80
ppy-miR-1299 MIMAT0016220 Pongo pygmaeus miR-1299 12 80
ppy-miR-619 MIMAT0016061 Pongo pygmaeus miR-619 12 80
ppy-miR-520c-5p MIMAT0015969 Pongo pygmaeus miR-520c-5p 12 80
hsa-miR-3116 MIMAT0014978 Homo sapiens miR-3116 12 80
tgu-miR-2996 MIMAT0014600 Taeniopygia guttata miR-2996 12 80
tgu-miR-2959 MIMAT0014458 Taeniopygia guttata miR-2959 12 80
bmo-miR-2807a MIMAT0013716 Bombyx mori miR-2807a 12 80
mmu-miR-1956 MIMAT0009428 Mus musculus miR-1956 12 80
ptr-miR-619 MIMAT0008281 Pan troglodytes miR-619 12 80
ptr-miR-1299 MIMAT0008018 Pan troglodytes miR-1299 12 80
ptr-miR-1254 MIMAT0007979 Pan troglodytes miR-1254 12 80
osa-miR1860-3p MIMAT0007794 Oryza sativa miR1860-3p 12 80
cel-miR-1823-3p MIMAT0006590 Caenorhabditis elegans miR-1823-3p 12 80
mml-miR-584-3p MIMAT0026900 Macaca mulatta miR-584-3p 12 80
oan-miR-1422o-3p MIMAT0007104 Ornithorhynchus anatinus miR-1422o-3p 12 80
oan-miR-1355-5p MIMAT0006951 Ornithorhynchus anatinus miR-1355-5p 12 80
hsa-miR-1254 MIMAT0005905 Homo sapiens miR-1254 12 80
hsa-miR-1299 MIMAT0005887 Homo sapiens miR-1299 12 80
dme-miR-982-5p MIMAT0005498 Drosophila melanogaster miR-982-5p 12 80
sme-miR-2a-1-5p MIMAT0003964 Schmidtea mediterranea miR-2a-1-5p 12 80
ebv-miR-BART7-5p MIMAT0004815 Epstein Barr miR-BART7-5p 12 80
hsa-miR-619-3p MIMAT0003288 Homo sapiens miR-619-3p 12 80
mml-miR-141-5p MIMAT0026561 Macaca mulatta miR-141-5p 12 80
cel-miR-60-5p MIMAT0015102 Caenorhabditis elegans miR-60-5p 12 80
>oha-miR-875-3p MIMAT0036952 Ophiophagus hannah miR-875-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccagg 7
|||||||
Sbjct: 7 ttccagg 1
>dme-miR-4978-5p MIMAT0020210 Drosophila melanogaster
miR-4978-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccagg 7
|||||||
Sbjct: 8 ttccagg 2
>ppy-miR-875-3p MIMAT0016114 Pongo pygmaeus miR-875-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccagg 7
|||||||
Sbjct: 7 ttccagg 1
>dvi-miR-284-5p MIMAT0032097 Drosophila virilis miR-284-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccagg 7
|||||||
Sbjct: 7 ttccagg 1
>mml-miR-875-3p MIMAT0006518 Macaca mulatta miR-875-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccagg 7
|||||||
Sbjct: 7 ttccagg 1
>hsa-miR-875-3p MIMAT0004923 Homo sapiens miR-875-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccagg 7
|||||||
Sbjct: 7 ttccagg 1
>hcmv-miR-UL36-3p MIMAT0004754 Human cytomegalovirus miR-UL36-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttccagg 7
|||||||
Sbjct: 2 ttccagg 8
>dme-miR-284-5p MIMAT0020811 Drosophila melanogaster miR-284-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttccagg 7
|||||||
Sbjct: 7 ttccagg 1
>ssc-miR-9846-3p MIMAT0037065 Sus scrofa miR-9846-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 8 tccagg 3
>ssc-miR-9830-5p MIMAT0037048 Sus scrofa miR-9830-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 8 ttccag 3
>ssc-miR-9816-3p MIMAT0037034 Sus scrofa miR-9816-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 6 ttccag 1
>rno-miR-1956-5p MIMAT0035735 Rattus norvegicus miR-1956-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 3 tccagg 8
>efu-miR-7a MIMAT0035157 Eptesicus fuscus miR-7a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 6 ttccag 1
>eca-miR-9153 MIMAT0034729 Equus caballus miR-9153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 3 tccagg 8
>eca-miR-9146 MIMAT0034722 Equus caballus miR-9146
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 7 tccagg 2
>eca-miR-9122 MIMAT0034672 Equus caballus miR-9122
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 7 tccagg 2
>eca-miR-8934 MIMAT0034463 Equus caballus miR-8934
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 8 tccagg 3
>eca-miR-8912 MIMAT0034440 Equus caballus miR-8912
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 1 ttccag 6
>eca-miR-8911 MIMAT0034439 Equus caballus miR-8911
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 6 tccagg 1
>cfa-miR-8832 MIMAT0034325 Canis familiaris miR-8832
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 1 tccagg 6
>ssa-miR-462a-3p MIMAT0032654 Salmo salar miR-462a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 6 tccagg 1
>stu-miR8009 MIMAT0030902 Solanum tuberosum miR8009
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 3 ttccag 8
>stu-miR8008a MIMAT0030901 Solanum tuberosum miR8008a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 3 ttccag 8
>mdo-miR-7270-3p MIMAT0028511 Monodelphis domestica miR-7270-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 1 tccagg 6
>mmu-miR-7222-3p MIMAT0028413 Mus musculus miR-7222-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 1 tccagg 6
>hsa-miR-7113-5p MIMAT0028123 Homo sapiens miR-7113-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 1 tccagg 6
>mmu-miR-7033-5p MIMAT0027970 Mus musculus miR-7033-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 3 tccagg 8
>mmu-miR-6950-5p MIMAT0027800 Mus musculus miR-6950-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 7 tccagg 2
>hsa-miR-6720-5p MIMAT0027345 Homo sapiens miR-6720-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 1 ttccag 6
>gga-miR-6624-3p MIMAT0025720 Gallus gallus miR-6624-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 1 tccagg 6
>gga-miR-6587-3p MIMAT0025679 Gallus gallus miR-6587-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 8 ttccag 3
>hsa-miR-6512-3p MIMAT0025481 Homo sapiens miR-6512-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 1 ttccag 6
>mmu-miR-6379 MIMAT0025125 Mus musculus miR-6379
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 8 tccagg 3
>ppe-miR6258 MIMAT0027271 Prunus persica miR6258
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 1 ttccag 6
>ppy-miR-151b MIMAT0024394 Pongo pygmaeus miR-151b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 1 tccagg 6
>cgr-miR-1956 MIMAT0023830 Cricetulus griseus miR-1956
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 3 tccagg 8
>cgr-miR-1903 MIMAT0023820 Cricetulus griseus miR-1903
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 6 ttccag 1
>ame-miR-6065 MIMAT0023690 Apis mellifera miR-6065
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 6 ttccag 1
>asu-miR-87b-5p MIMAT0021483 Ascaris suum miR-87b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 8 tccagg 3
>dme-miR-4982-3p MIMAT0020216 Drosophila melanogaster
miR-4982-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 8 ttccag 3
>dme-miR-4976-5p MIMAT0020206 Drosophila melanogaster
miR-4976-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 1 tccagg 6
>hsa-miR-4673 MIMAT0019755 Homo sapiens miR-4673
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 1 tccagg 6
>hsa-miR-4638-3p MIMAT0019696 Homo sapiens miR-4638-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 6 tccagg 1
>pma-miR-145-3p MIMAT0019477 Petromyzon marinus miR-145-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 3 ttccag 8
>vvi-miR3625-5p MIMAT0018013 Vitis vinifera miR3625-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 1 ttccag 6
>hsa-miR-4308 MIMAT0016861 Homo sapiens miR-4308
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 8 tccagg 3
>rno-miR-3561-3p MIMAT0017831 Rattus norvegicus miR-3561-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 3 tccagg 8
>ppy-miR-1299 MIMAT0016220 Pongo pygmaeus miR-1299
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 8 ttccag 3
>ppy-miR-619 MIMAT0016061 Pongo pygmaeus miR-619
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 8 tccagg 3
>ppy-miR-520c-5p MIMAT0015969 Pongo pygmaeus miR-520c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 8 ttccag 3
>hsa-miR-3116 MIMAT0014978 Homo sapiens miR-3116
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 8 tccagg 3
>tgu-miR-2996 MIMAT0014600 Taeniopygia guttata miR-2996
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 3 ttccag 8
>tgu-miR-2959 MIMAT0014458 Taeniopygia guttata miR-2959
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 8 tccagg 3
>bmo-miR-2807a MIMAT0013716 Bombyx mori miR-2807a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 1 ttccag 6
>mmu-miR-1956 MIMAT0009428 Mus musculus miR-1956
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tccagg 7
||||||
Sbjct: 3 tccagg 8
>ptr-miR-619 MIMAT0008281 Pan troglodytes miR-619
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 8 tccagg 3
>ptr-miR-1299 MIMAT0008018 Pan troglodytes miR-1299
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 8 ttccag 3
>ptr-miR-1254 MIMAT0007979 Pan troglodytes miR-1254
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 8 tccagg 3
>osa-miR1860-3p MIMAT0007794 Oryza sativa miR1860-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 8 ttccag 3
>cel-miR-1823-3p MIMAT0006590 Caenorhabditis elegans miR-1823-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 8 ttccag 3
>mml-miR-584-3p MIMAT0026900 Macaca mulatta miR-584-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 3 ttccag 8
>oan-miR-1422o-3p MIMAT0007104 Ornithorhynchus anatinus
miR-1422o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 6 ttccag 1
>oan-miR-1355-5p MIMAT0006951 Ornithorhynchus anatinus
miR-1355-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 3 ttccag 8
>hsa-miR-1254 MIMAT0005905 Homo sapiens miR-1254
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 8 tccagg 3
>hsa-miR-1299 MIMAT0005887 Homo sapiens miR-1299
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 8 ttccag 3
>dme-miR-982-5p MIMAT0005498 Drosophila melanogaster miR-982-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 7 tccagg 2
>sme-miR-2a-1-5p MIMAT0003964 Schmidtea mediterranea miR-2a-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 3 ttccag 8
>ebv-miR-BART7-5p MIMAT0004815 Epstein Barr miR-BART7-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 6 tccagg 1
>hsa-miR-619-3p MIMAT0003288 Homo sapiens miR-619-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tccagg 7
||||||
Sbjct: 8 tccagg 3
>mml-miR-141-5p MIMAT0026561 Macaca mulatta miR-141-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttccag 6
||||||
Sbjct: 3 ttccag 8
>cel-miR-60-5p MIMAT0015102 Caenorhabditis elegans miR-60-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttccag 6
||||||
Sbjct: 8 ttccag 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 101
Number of extensions: 93
Number of successful extensions: 71
Number of sequences better than 100.0: 71
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 71
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)