BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= iltv-miR-i5*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
iltv-miR-I5-5p MIMAT0012728 Infectious laryngotracheitis miR-I5-5p 14 20
ppy-miR-516a MIMAT0036453 Pongo pygmaeus miR-516a 12 80
ggo-miR-516a MIMAT0036443 Gorilla gorilla miR-516a 12 80
ggo-miR-516a-5p MIMAT0036441 Gorilla gorilla miR-516a-5p 12 80
bra-miR9565-5p MIMAT0035689 Brassica rapa miR9565-5p 12 80
ppc-miR-8359-5p MIMAT0033280 Pristionchus pacificus miR-8359-5p 12 80
ppc-miR-8334-3p MIMAT0033213 Pristionchus pacificus miR-8334-3p 12 80
bbe-miR-4887-5p MIMAT0031704 Branchiostoma belcheri miR-4887-5p 12 80
stu-miR1919-3p MIMAT0031239 Solanum tuberosum miR1919-3p 12 80
rgl-miR7801 MIMAT0032242 Rehmannia glutinosa miR7801 12 80
bdi-miR7779-3p MIMAT0030313 Brachypodium distachyon miR7779-3p 12 80
bdi-miR7733-5p MIMAT0030200 Brachypodium distachyon miR7733-5p 12 80
bdi-miR7725a-5p MIMAT0030178 Brachypodium distachyon miR7725a-5p 12 80
mmu-miR-219c-3p MIMAT0029893 Mus musculus miR-219c-3p 12 80
oan-miR-7425-5p MIMAT0029000 Ornithorhynchus anatinus miR-7425-5p 12 80
cme-miR858 MIMAT0026083 Cucumis melo miR858 12 80
pti-miR5471 MIMAT0022104 Phaeodactylum tricornutum miR5471 12 80
rmi-miR-5324 MIMAT0021397 Rhipicephalus microplus miR-5324 12 80
bdi-miR5173-5p MIMAT0020717 Brachypodium distachyon miR5173-5p 12 80
bfl-miR-4887 MIMAT0020474 Branchiostoma floridae miR-4887 12 80
pma-miR-4582 MIMAT0019615 Petromyzon marinus miR-4582 12 80
ame-miR-3741 MIMAT0018610 Apis mellifera miR-3741 12 80
bta-miR-3601 MIMAT0016936 Bos taurus miR-3601 12 80
ppy-miR-516a-5p MIMAT0015945 Pongo pygmaeus miR-516a-5p 12 80
aly-miR868-5p MIMAT0017655 Arabidopsis lyrata miR868-5p 12 80
aly-miR825-3p MIMAT0017606 Arabidopsis lyrata miR825-3p 12 80
bmo-miR-3322 MIMAT0015509 Bombyx mori miR-3322 12 80
api-miR-3022 MIMAT0014758 Acyrthosiphon pisum miR-3022 12 80
cqu-miR-11-5p MIMAT0014406 Culex quinquefasciatus miR-11-5p 12 80
bhv1-miR-B1 MIMAT0013962 Bovine herpesvirus miR-B1 12 80
osa-miR2118a MIMAT0011740 Oryza sativa miR2118a 12 80
sly-miR1919c-3p MIMAT0007913 Solanum lycopersicum miR1919c-3p 12 80
sly-miR1919b MIMAT0007912 Solanum lycopersicum miR1919b 12 80
sly-miR1919a MIMAT0007911 Solanum lycopersicum miR1919a 12 80
mdv2-miR-M28-5p MIMAT0004474 Mareks disease miR-M28-5p 12 80
mmu-miR-698-3p MIMAT0003488 Mus musculus miR-698-3p 12 80
hsa-miR-516a-5p MIMAT0004770 Homo sapiens miR-516a-5p 12 80
>iltv-miR-I5-5p MIMAT0012728 Infectious laryngotracheitis
miR-I5-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttctcgt 7
|||||||
Sbjct: 2 ttctcgt 8
>ppy-miR-516a MIMAT0036453 Pongo pygmaeus miR-516a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 1 ttctcg 6
>ggo-miR-516a MIMAT0036443 Gorilla gorilla miR-516a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 1 ttctcg 6
>ggo-miR-516a-5p MIMAT0036441 Gorilla gorilla miR-516a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 1 ttctcg 6
>bra-miR9565-5p MIMAT0035689 Brassica rapa miR9565-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgt 7
||||||
Sbjct: 1 tctcgt 6
>ppc-miR-8359-5p MIMAT0033280 Pristionchus pacificus miR-8359-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgt 7
||||||
Sbjct: 6 tctcgt 1
>ppc-miR-8334-3p MIMAT0033213 Pristionchus pacificus miR-8334-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgt 7
||||||
Sbjct: 8 tctcgt 3
>bbe-miR-4887-5p MIMAT0031704 Branchiostoma belcheri miR-4887-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 1 ttctcg 6
>stu-miR1919-3p MIMAT0031239 Solanum tuberosum miR1919-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgt 7
||||||
Sbjct: 6 tctcgt 1
>rgl-miR7801 MIMAT0032242 Rehmannia glutinosa miR7801
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgt 7
||||||
Sbjct: 7 tctcgt 2
>bdi-miR7779-3p MIMAT0030313 Brachypodium distachyon miR7779-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 1 ttctcg 6
>bdi-miR7733-5p MIMAT0030200 Brachypodium distachyon miR7733-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 1 ttctcg 6
>bdi-miR7725a-5p MIMAT0030178 Brachypodium distachyon
miR7725a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgt 7
||||||
Sbjct: 8 tctcgt 3
>mmu-miR-219c-3p MIMAT0029893 Mus musculus miR-219c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcg 6
||||||
Sbjct: 6 ttctcg 1
>oan-miR-7425-5p MIMAT0029000 Ornithorhynchus anatinus
miR-7425-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 1 ttctcg 6
>cme-miR858 MIMAT0026083 Cucumis melo miR858
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgt 7
||||||
Sbjct: 1 tctcgt 6
>pti-miR5471 MIMAT0022104 Phaeodactylum tricornutum miR5471
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcg 6
||||||
Sbjct: 6 ttctcg 1
>rmi-miR-5324 MIMAT0021397 Rhipicephalus microplus miR-5324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcg 6
||||||
Sbjct: 8 ttctcg 3
>bdi-miR5173-5p MIMAT0020717 Brachypodium distachyon miR5173-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgt 7
||||||
Sbjct: 1 tctcgt 6
>bfl-miR-4887 MIMAT0020474 Branchiostoma floridae miR-4887
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 1 ttctcg 6
>pma-miR-4582 MIMAT0019615 Petromyzon marinus miR-4582
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgt 7
||||||
Sbjct: 1 tctcgt 6
>ame-miR-3741 MIMAT0018610 Apis mellifera miR-3741
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgt 7
||||||
Sbjct: 6 tctcgt 1
>bta-miR-3601 MIMAT0016936 Bos taurus miR-3601
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgt 7
||||||
Sbjct: 1 tctcgt 6
>ppy-miR-516a-5p MIMAT0015945 Pongo pygmaeus miR-516a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 1 ttctcg 6
>aly-miR868-5p MIMAT0017655 Arabidopsis lyrata miR868-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 3 ttctcg 8
>aly-miR825-3p MIMAT0017606 Arabidopsis lyrata miR825-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 1 ttctcg 6
>bmo-miR-3322 MIMAT0015509 Bombyx mori miR-3322
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgt 7
||||||
Sbjct: 1 tctcgt 6
>api-miR-3022 MIMAT0014758 Acyrthosiphon pisum miR-3022
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tctcgt 7
||||||
Sbjct: 1 tctcgt 6
>cqu-miR-11-5p MIMAT0014406 Culex quinquefasciatus miR-11-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttctcg 6
||||||
Sbjct: 6 ttctcg 1
>bhv1-miR-B1 MIMAT0013962 Bovine herpesvirus miR-B1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgt 7
||||||
Sbjct: 8 tctcgt 3
>osa-miR2118a MIMAT0011740 Oryza sativa miR2118a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 1 ttctcg 6
>sly-miR1919c-3p MIMAT0007913 Solanum lycopersicum miR1919c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgt 7
||||||
Sbjct: 6 tctcgt 1
>sly-miR1919b MIMAT0007912 Solanum lycopersicum miR1919b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgt 7
||||||
Sbjct: 6 tctcgt 1
>sly-miR1919a MIMAT0007911 Solanum lycopersicum miR1919a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tctcgt 7
||||||
Sbjct: 6 tctcgt 1
>mdv2-miR-M28-5p MIMAT0004474 Mareks disease miR-M28-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 3 ttctcg 8
>mmu-miR-698-3p MIMAT0003488 Mus musculus miR-698-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 3 ttctcg 8
>hsa-miR-516a-5p MIMAT0004770 Homo sapiens miR-516a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttctcg 6
||||||
Sbjct: 1 ttctcg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 43
Number of extensions: 42
Number of successful extensions: 37
Number of sequences better than 100.0: 37
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 37
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)