BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv1-miR-h7*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
osa-miR5079b MIMAT0031376 Oryza sativa miR5079b 14 20
osa-miR7692-5p MIMAT0029955 Oryza sativa miR7692-5p 14 20
osa-miR5079a MIMAT0020578 Oryza sativa miR5079a 14 20
hsv1-miR-H7-3p MIMAT0012596 Herpes Simplex miR-H7-3p 14 20
gma-miR9755 MIMAT0036386 Glycine max miR9755 12 80
nve-miR-9465 MIMAT0035424 Nematostella vectensis miR-9465 12 80
efu-miR-9232 MIMAT0034838 Eptesicus fuscus miR-9232 12 80
cfa-miR-8859a MIMAT0034354 Canis familiaris miR-8859a 12 80
cfa-miR-8795 MIMAT0034285 Canis familiaris miR-8795 12 80
gra-miR7493b MIMAT0034256 Gossypium raimondii miR7493b 12 80
gra-miR8774 MIMAT0034212 Gossypium raimondii miR8774 12 80
gra-miR8773 MIMAT0034211 Gossypium raimondii miR8773 12 80
ppc-miR-2235b-5p MIMAT0032850 Pristionchus pacificus miR-2235b-5p 12 80
cel-miR-8201-5p MIMAT0032815 Caenorhabditis elegans miR-8201-5p 12 80
cel-miR-8191-3p MIMAT0032796 Caenorhabditis elegans miR-8191-3p 12 80
stu-miR8017 MIMAT0030914 Solanum tuberosum miR8017 12 80
stu-miR8015-5p MIMAT0030912 Solanum tuberosum miR8015-5p 12 80
bdi-miR7748a-5p MIMAT0030236 Brachypodium distachyon miR7748a-5p 12 80
oan-miR-7420-3p MIMAT0028991 Ornithorhynchus anatinus miR-7420-3p 12 80
mdo-miR-7386g-5p MIMAT0028860 Monodelphis domestica miR-7386g-5p 12 80
mdo-miR-7386e-5p MIMAT0028852 Monodelphis domestica miR-7386e-5p 12 80
mdo-miR-7305-5p MIMAT0028604 Monodelphis domestica miR-7305-5p 12 80
mdo-miR-7303-5p MIMAT0028600 Monodelphis domestica miR-7303-5p 12 80
mdo-miR-7252-5p MIMAT0028470 Monodelphis domestica miR-7252-5p 12 80
hsa-miR-7151-5p MIMAT0028212 Homo sapiens miR-7151-5p 12 80
mdm-miR319c MIMAT0026058 Malus domestica miR319c 12 80
mmu-miR-6957-3p MIMAT0027815 Mus musculus miR-6957-3p 12 80
gga-miR-6681-5p MIMAT0025786 Gallus gallus miR-6681-5p 12 80
hvu-miR6188 MIMAT0024812 Hordeum vulgare miR6188 12 80
bra-miR5717 MIMAT0023014 Brassica rapa miR5717 12 80
bra-miR5716 MIMAT0023013 Brassica rapa miR5716 12 80
ath-miR5632-3p MIMAT0022392 Arabidopsis thaliana miR5632-3p 12 80
osa-miR5506 MIMAT0022139 Oryza sativa miR5506 12 80
osa-miR5490 MIMAT0022123 Oryza sativa miR5490 12 80
mtr-miR4414a-3p MIMAT0021207 Medicago truncatula miR4414a-3p 12 80
bdi-miR5181a-5p MIMAT0020730 Brachypodium distachyon miR5181a-5p 12 80
osa-miR5161 MIMAT0021114 Oryza sativa miR5161 12 80
csi-miR393 MIMAT0018460 Citrus sinensis miR393 12 80
gma-miR4383 MIMAT0018290 Glycine max miR4383 12 80
vvi-miR3631b-3p MIMAT0018032 Vitis vinifera miR3631b-3p 12 80
aly-miR4246 MIMAT0017935 Arabidopsis lyrata miR4246 12 80
ppy-miR-640 MIMAT0016078 Pongo pygmaeus miR-640 12 80
bmo-miR-3422 MIMAT0015630 Bombyx mori miR-3422 12 80
bmo-miR-3303 MIMAT0015491 Bombyx mori miR-3303 12 80
aae-miR-263b-3p MIMAT0014310 Aedes aegypti miR-263b-3p 12 80
rlcv-miR-rL1-20-3p MIMAT0014066 Rhesus lymphocryptovirus miR-rL1... 12 80
bmo-miR-2832 MIMAT0013746 Bombyx mori miR-2832 12 80
dsi-miR-976 MIMAT0012502 Drosophila simulans miR-976 12 80
ptr-miR-640 MIMAT0008294 Pan troglodytes miR-640 12 80
mmu-miR-1897-5p MIMAT0007864 Mus musculus miR-1897-5p 12 80
mml-miR-640 MIMAT0006482 Macaca mulatta miR-640 12 80
gga-miR-1740-3p MIMAT0007644 Gallus gallus miR-1740-3p 12 80
gga-miR-1616 MIMAT0007483 Gallus gallus miR-1616 12 80
oan-miR-1420b-5p MIMAT0006924 Ornithorhynchus anatinus miR-1420b-5p 12 80
ppt-miR1056 MIMAT0005174 Physcomitrella patens miR1056 12 80
dme-miR-984-3p MIMAT0020881 Drosophila melanogaster miR-984-3p 12 80
dme-miR-976-3p MIMAT0005492 Drosophila melanogaster miR-976-3p 12 80
pta-miR159b MIMAT0004991 Pinus taeda miR159b 12 80
pta-miR159a MIMAT0004990 Pinus taeda miR159a 12 80
hsa-miR-640 MIMAT0003310 Homo sapiens miR-640 12 80
>osa-miR5079b MIMAT0031376 Oryza sativa miR5079b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttggatc 7
|||||||
Sbjct: 2 ttggatc 8
>osa-miR7692-5p MIMAT0029955 Oryza sativa miR7692-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttggatc 7
|||||||
Sbjct: 7 ttggatc 1
>osa-miR5079a MIMAT0020578 Oryza sativa miR5079a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttggatc 7
|||||||
Sbjct: 2 ttggatc 8
>hsv1-miR-H7-3p MIMAT0012596 Herpes Simplex miR-H7-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttggatc 7
|||||||
Sbjct: 2 ttggatc 8
>gma-miR9755 MIMAT0036386 Glycine max miR9755
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatc 7
||||||
Sbjct: 7 tggatc 2
>nve-miR-9465 MIMAT0035424 Nematostella vectensis miR-9465
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>efu-miR-9232 MIMAT0034838 Eptesicus fuscus miR-9232
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>cfa-miR-8859a MIMAT0034354 Canis familiaris miR-8859a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatc 7
||||||
Sbjct: 1 tggatc 6
>cfa-miR-8795 MIMAT0034285 Canis familiaris miR-8795
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>gra-miR7493b MIMAT0034256 Gossypium raimondii miR7493b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>gra-miR8774 MIMAT0034212 Gossypium raimondii miR8774
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>gra-miR8773 MIMAT0034211 Gossypium raimondii miR8773
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>ppc-miR-2235b-5p MIMAT0032850 Pristionchus pacificus
miR-2235b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggat 6
||||||
Sbjct: 8 ttggat 3
>cel-miR-8201-5p MIMAT0032815 Caenorhabditis elegans miR-8201-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatc 7
||||||
Sbjct: 3 tggatc 8
>cel-miR-8191-3p MIMAT0032796 Caenorhabditis elegans miR-8191-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggat 6
||||||
Sbjct: 8 ttggat 3
>stu-miR8017 MIMAT0030914 Solanum tuberosum miR8017
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggat 6
||||||
Sbjct: 6 ttggat 1
>stu-miR8015-5p MIMAT0030912 Solanum tuberosum miR8015-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 3 ttggat 8
>bdi-miR7748a-5p MIMAT0030236 Brachypodium distachyon
miR7748a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggat 6
||||||
Sbjct: 6 ttggat 1
>oan-miR-7420-3p MIMAT0028991 Ornithorhynchus anatinus
miR-7420-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatc 7
||||||
Sbjct: 3 tggatc 8
>mdo-miR-7386g-5p MIMAT0028860 Monodelphis domestica
miR-7386g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 3 ttggat 8
>mdo-miR-7386e-5p MIMAT0028852 Monodelphis domestica
miR-7386e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 3 ttggat 8
>mdo-miR-7305-5p MIMAT0028604 Monodelphis domestica miR-7305-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggat 6
||||||
Sbjct: 8 ttggat 3
>mdo-miR-7303-5p MIMAT0028600 Monodelphis domestica miR-7303-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggat 6
||||||
Sbjct: 8 ttggat 3
>mdo-miR-7252-5p MIMAT0028470 Monodelphis domestica miR-7252-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>hsa-miR-7151-5p MIMAT0028212 Homo sapiens miR-7151-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatc 7
||||||
Sbjct: 6 tggatc 1
>mdm-miR319c MIMAT0026058 Malus domestica miR319c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggat 6
||||||
Sbjct: 6 ttggat 1
>mmu-miR-6957-3p MIMAT0027815 Mus musculus miR-6957-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatc 7
||||||
Sbjct: 1 tggatc 6
>gga-miR-6681-5p MIMAT0025786 Gallus gallus miR-6681-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatc 7
||||||
Sbjct: 3 tggatc 8
>hvu-miR6188 MIMAT0024812 Hordeum vulgare miR6188
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatc 7
||||||
Sbjct: 3 tggatc 8
>bra-miR5717 MIMAT0023014 Brassica rapa miR5717
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 3 ttggat 8
>bra-miR5716 MIMAT0023013 Brassica rapa miR5716
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>ath-miR5632-3p MIMAT0022392 Arabidopsis thaliana miR5632-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>osa-miR5506 MIMAT0022139 Oryza sativa miR5506
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatc 7
||||||
Sbjct: 1 tggatc 6
>osa-miR5490 MIMAT0022123 Oryza sativa miR5490
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>mtr-miR4414a-3p MIMAT0021207 Medicago truncatula miR4414a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggat 6
||||||
Sbjct: 6 ttggat 1
>bdi-miR5181a-5p MIMAT0020730 Brachypodium distachyon
miR5181a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatc 7
||||||
Sbjct: 7 tggatc 2
>osa-miR5161 MIMAT0021114 Oryza sativa miR5161
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatc 7
||||||
Sbjct: 3 tggatc 8
>csi-miR393 MIMAT0018460 Citrus sinensis miR393
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggat 6
||||||
Sbjct: 6 ttggat 1
>gma-miR4383 MIMAT0018290 Glycine max miR4383
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 3 ttggat 8
>vvi-miR3631b-3p MIMAT0018032 Vitis vinifera miR3631b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 3 ttggat 8
>aly-miR4246 MIMAT0017935 Arabidopsis lyrata miR4246
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggat 6
||||||
Sbjct: 8 ttggat 3
>ppy-miR-640 MIMAT0016078 Pongo pygmaeus miR-640
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatc 7
||||||
Sbjct: 8 tggatc 3
>bmo-miR-3422 MIMAT0015630 Bombyx mori miR-3422
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatc 7
||||||
Sbjct: 1 tggatc 6
>bmo-miR-3303 MIMAT0015491 Bombyx mori miR-3303
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>aae-miR-263b-3p MIMAT0014310 Aedes aegypti miR-263b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatc 7
||||||
Sbjct: 1 tggatc 6
>rlcv-miR-rL1-20-3p MIMAT0014066 Rhesus lymphocryptovirus
miR-rL1-20-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatc 7
||||||
Sbjct: 3 tggatc 8
>bmo-miR-2832 MIMAT0013746 Bombyx mori miR-2832
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>dsi-miR-976 MIMAT0012502 Drosophila simulans miR-976
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>ptr-miR-640 MIMAT0008294 Pan troglodytes miR-640
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatc 7
||||||
Sbjct: 8 tggatc 3
>mmu-miR-1897-5p MIMAT0007864 Mus musculus miR-1897-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 3 ttggat 8
>mml-miR-640 MIMAT0006482 Macaca mulatta miR-640
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatc 7
||||||
Sbjct: 8 tggatc 3
>gga-miR-1740-3p MIMAT0007644 Gallus gallus miR-1740-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggat 6
||||||
Sbjct: 8 ttggat 3
>gga-miR-1616 MIMAT0007483 Gallus gallus miR-1616
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatc 7
||||||
Sbjct: 1 tggatc 6
>oan-miR-1420b-5p MIMAT0006924 Ornithorhynchus anatinus
miR-1420b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggat 6
||||||
Sbjct: 6 ttggat 1
>ppt-miR1056 MIMAT0005174 Physcomitrella patens miR1056
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tggatc 7
||||||
Sbjct: 1 tggatc 6
>dme-miR-984-3p MIMAT0020881 Drosophila melanogaster miR-984-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttggat 6
||||||
Sbjct: 6 ttggat 1
>dme-miR-976-3p MIMAT0005492 Drosophila melanogaster miR-976-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>pta-miR159b MIMAT0004991 Pinus taeda miR159b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>pta-miR159a MIMAT0004990 Pinus taeda miR159a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttggat 6
||||||
Sbjct: 1 ttggat 6
>hsa-miR-640 MIMAT0003310 Homo sapiens miR-640
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tggatc 7
||||||
Sbjct: 8 tggatc 3
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 148
Number of extensions: 144
Number of successful extensions: 60
Number of sequences better than 100.0: 60
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 60
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
