BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR77
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ptc-miR7818 MIMAT0030378 Populus trichocarpa miR7818 16 6.9
gma-miR171i-5p MIMAT0021056 Glycine max miR171i-5p 16 6.9
hvt-miR-H12-5p MIMAT0012863 Herpesvirus of miR-H12-5p 16 6.9
tae-miR1120b-3p MIMAT0035794 Triticum aestivum miR1120b-3p 14 27
gra-miR7484g MIMAT0034206 Gossypium raimondii miR7484g 14 27
sma-miR-8406-3p MIMAT0033517 Schistosoma mansoni miR-8406-3p 14 27
prd-miR-255-5p MIMAT0030760 Panagrellus redivivus miR-255-5p 14 27
bdi-miR7715-3p MIMAT0030153 Brachypodium distachyon miR7715-3p 14 27
ipu-miR-7570 MIMAT0029569 Ictalurus punctatus miR-7570 14 27
sbi-miR1435b MIMAT0011392 Sorghum bicolor miR1435b 14 27
sbi-miR1435a MIMAT0011391 Sorghum bicolor miR1435a 14 27
osa-miR1435 MIMAT0005986 Oryza sativa miR1435 14 27
cel-miR-255-5p MIMAT0020341 Caenorhabditis elegans miR-255-5p 14 27
>ptc-miR7818 MIMAT0030378 Populus trichocarpa miR7818
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttcttat 8
||||||||
Sbjct: 1 tttcttat 8
>gma-miR171i-5p MIMAT0021056 Glycine max miR171i-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tttcttat 8
||||||||
Sbjct: 8 tttcttat 1
>hvt-miR-H12-5p MIMAT0012863 Herpesvirus of miR-H12-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tttcttat 8
||||||||
Sbjct: 1 tttcttat 8
>tae-miR1120b-3p MIMAT0035794 Triticum aestivum miR1120b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcttat 8
|||||||
Sbjct: 1 ttcttat 7
>gra-miR7484g MIMAT0034206 Gossypium raimondii miR7484g
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcttat 8
|||||||
Sbjct: 1 ttcttat 7
>sma-miR-8406-3p MIMAT0033517 Schistosoma mansoni miR-8406-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttctta 7
|||||||
Sbjct: 2 tttctta 8
>prd-miR-255-5p MIMAT0030760 Panagrellus redivivus miR-255-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctta 7
|||||||
Sbjct: 8 tttctta 2
>bdi-miR7715-3p MIMAT0030153 Brachypodium distachyon miR7715-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctta 7
|||||||
Sbjct: 7 tttctta 1
>ipu-miR-7570 MIMAT0029569 Ictalurus punctatus miR-7570
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ttcttat 8
|||||||
Sbjct: 1 ttcttat 7
>sbi-miR1435b MIMAT0011392 Sorghum bicolor miR1435b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttctta 7
|||||||
Sbjct: 1 tttctta 7
>sbi-miR1435a MIMAT0011391 Sorghum bicolor miR1435a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttctta 7
|||||||
Sbjct: 1 tttctta 7
>osa-miR1435 MIMAT0005986 Oryza sativa miR1435
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tttctta 7
|||||||
Sbjct: 1 tttctta 7
>cel-miR-255-5p MIMAT0020341 Caenorhabditis elegans miR-255-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tttctta 7
|||||||
Sbjct: 8 tttctta 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 139
Number of extensions: 123
Number of successful extensions: 102
Number of sequences better than 100.0: 13
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
