BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m24*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
lja-miR7535 MIMAT0029360 Lotus japonicus miR7535 14 20
mdo-miR-7249-3p MIMAT0028465 Monodelphis domestica miR-7249-3p 14 20
gga-miR-6572-5p MIMAT0025651 Gallus gallus miR-6572-5p 14 20
ptc-miR6468-5p MIMAT0027337 Populus trichocarpa miR6468-5p 14 20
osa-miR6255 MIMAT0024878 Oryza sativa miR6255 14 20
hsa-miR-6124 MIMAT0024597 Homo sapiens miR-6124 14 20
bdi-miR5198 MIMAT0020755 Brachypodium distachyon miR5198 14 20
hsa-miR-4668-5p MIMAT0019745 Homo sapiens miR-4668-5p 14 20
csi-miR472 MIMAT0018473 Citrus sinensis miR472 14 20
cin-miR-4166-5p MIMAT0016774 Ciona intestinalis miR-4166-5p 14 20
bta-miR-2370-5p MIMAT0011914 Bos taurus miR-2370-5p 14 20
mdv2-miR-M24-5p MIMAT0012543 Mareks disease miR-M24-5p 14 20
ptc-miR472b MIMAT0002061 Populus trichocarpa miR472b 14 20
ptc-miR472a MIMAT0002060 Populus trichocarpa miR472a 14 20
tch-miR-9771l MIMAT0036597 Tupaia chinensis miR-9771l 12 80
tch-miR-9771a MIMAT0036469 Tupaia chinensis miR-9771a 12 80
bra-miR9555a-3p MIMAT0035664 Brassica rapa miR9555a-3p 12 80
sly-miR9477-3p MIMAT0035472 Solanum lycopersicum miR9477-3p 12 80
efu-miR-9330 MIMAT0035072 Eptesicus fuscus miR-9330 12 80
eca-miR-8920 MIMAT0034448 Equus caballus miR-8920 12 80
ppc-miR-8281-5p MIMAT0033065 Pristionchus pacificus miR-8281-5p 12 80
bdi-miR7708a-5p MIMAT0030133 Brachypodium distachyon miR7708a-5p 12 80
tgu-miR-7644-3p MIMAT0029789 Taeniopygia guttata miR-7644-3p 12 80
lja-miR7545 MIMAT0029372 Lotus japonicus miR7545 12 80
gga-miR-7466-3p MIMAT0029087 Gallus gallus miR-7466-3p 12 80
mmu-miR-7211-5p MIMAT0028390 Mus musculus miR-7211-5p 12 80
mml-miR-7164-5p MIMAT0028252 Macaca mulatta miR-7164-5p 12 80
ssc-miR-7144-5p MIMAT0028163 Sus scrofa miR-7144-5p 12 80
mmu-miR-7053-5p MIMAT0028010 Mus musculus miR-7053-5p 12 80
mmu-miR-7009-3p MIMAT0027923 Mus musculus miR-7009-3p 12 80
mmu-miR-6959-5p MIMAT0027818 Mus musculus miR-6959-5p 12 80
mmu-miR-6903-5p MIMAT0027706 Mus musculus miR-6903-5p 12 80
hsa-miR-6739-5p MIMAT0027379 Homo sapiens miR-6739-5p 12 80
hsa-miR-6733-5p MIMAT0027367 Homo sapiens miR-6733-5p 12 80
gga-miR-6562-5p MIMAT0025832 Gallus gallus miR-6562-5p 12 80
ptc-miR6444 MIMAT0025247 Populus trichocarpa miR6444 12 80
tca-miR-6014-3p MIMAT0023570 Tribolium castaneum miR-6014-3p 12 80
osa-miR812u MIMAT0023273 Oryza sativa miR812u 12 80
osa-miR812t MIMAT0023272 Oryza sativa miR812t 12 80
ssl-miR395 MIMAT0022516 Salvia sclarea miR395 12 80
hsa-miR-5584-5p MIMAT0022283 Homo sapiens miR-5584-5p 12 80
mtr-miR5558-5p MIMAT0022219 Medicago truncatula miR5558-5p 12 80
mtr-miR2592bn-3p MIMAT0022218 Medicago truncatula miR2592bn-3p 12 80
mtr-miR2592bm-3p MIMAT0022214 Medicago truncatula miR2592bm-3p 12 80
aca-miR-5412-3p MIMAT0022031 Anolis carolinensis miR-5412-3p 12 80
aca-miR-5403 MIMAT0022016 Anolis carolinensis miR-5403 12 80
hsa-miR-5006-3p MIMAT0021034 Homo sapiens miR-5006-3p 12 80
dme-miR-4962-5p MIMAT0020183 Drosophila melanogaster miR-4962-5p 12 80
hsa-miR-4755-5p MIMAT0019895 Homo sapiens miR-4755-5p 12 80
osa-miR812n-3p MIMAT0019680 Oryza sativa miR812n-3p 12 80
ame-miR-3740 MIMAT0018609 Apis mellifera miR-3740 12 80
ame-miR-3729 MIMAT0018596 Apis mellifera miR-3729 12 80
vvi-miR3632-3p MIMAT0018036 Vitis vinifera miR3632-3p 12 80
ath-miR4221 MIMAT0017942 Arabidopsis thaliana miR4221 12 80
cin-miR-4009a-5p MIMAT0016501 Ciona intestinalis miR-4009a-5p 12 80
rno-miR-3564 MIMAT0017837 Rattus norvegicus miR-3564 12 80
mmu-miR-3092-5p MIMAT0014905 Mus musculus miR-3092-5p 12 80
eca-miR-684 MIMAT0012930 Equus caballus miR-684 12 80
mtr-miR2629g MIMAT0013369 Medicago truncatula miR2629g 12 80
mtr-miR2629f MIMAT0013368 Medicago truncatula miR2629f 12 80
mtr-miR2629c MIMAT0013367 Medicago truncatula miR2629c 12 80
mtr-miR2629b MIMAT0013366 Medicago truncatula miR2629b 12 80
mtr-miR2629e MIMAT0013365 Medicago truncatula miR2629e 12 80
mtr-miR2629d MIMAT0013364 Medicago truncatula miR2629d 12 80
mtr-miR2629a MIMAT0013363 Medicago truncatula miR2629a 12 80
osa-miR2103 MIMAT0010071 Oryza sativa miR2103 12 80
mmu-miR-1953 MIMAT0009424 Mus musculus miR-1953 12 80
mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p 12 80
oan-miR-1422o-3p MIMAT0007104 Ornithorhynchus anatinus miR-1422o-3p 12 80
oan-miR-1422g-3p MIMAT0006890 Ornithorhynchus anatinus miR-1422g-3p 12 80
oan-miR-1422e-3p MIMAT0006882 Ornithorhynchus anatinus miR-1422e-3p 12 80
dme-miR-991-5p MIMAT0020890 Drosophila melanogaster miR-991-5p 12 80
mmu-miR-684 MIMAT0003462 Mus musculus miR-684 12 80
>lja-miR7535 MIMAT0029360 Lotus japonicus miR7535
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttccc 7
|||||||
Sbjct: 7 ttttccc 1
>mdo-miR-7249-3p MIMAT0028465 Monodelphis domestica miR-7249-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttccc 7
|||||||
Sbjct: 8 ttttccc 2
>gga-miR-6572-5p MIMAT0025651 Gallus gallus miR-6572-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttccc 7
|||||||
Sbjct: 1 ttttccc 7
>ptc-miR6468-5p MIMAT0027337 Populus trichocarpa miR6468-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttccc 7
|||||||
Sbjct: 2 ttttccc 8
>osa-miR6255 MIMAT0024878 Oryza sativa miR6255
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttccc 7
|||||||
Sbjct: 8 ttttccc 2
>hsa-miR-6124 MIMAT0024597 Homo sapiens miR-6124
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttccc 7
|||||||
Sbjct: 7 ttttccc 1
>bdi-miR5198 MIMAT0020755 Brachypodium distachyon miR5198
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttccc 7
|||||||
Sbjct: 8 ttttccc 2
>hsa-miR-4668-5p MIMAT0019745 Homo sapiens miR-4668-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttccc 7
|||||||
Sbjct: 8 ttttccc 2
>csi-miR472 MIMAT0018473 Citrus sinensis miR472
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttccc 7
|||||||
Sbjct: 1 ttttccc 7
>cin-miR-4166-5p MIMAT0016774 Ciona intestinalis miR-4166-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttccc 7
|||||||
Sbjct: 8 ttttccc 2
>bta-miR-2370-5p MIMAT0011914 Bos taurus miR-2370-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 ttttccc 7
|||||||
Sbjct: 8 ttttccc 2
>mdv2-miR-M24-5p MIMAT0012543 Mareks disease miR-M24-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttccc 7
|||||||
Sbjct: 2 ttttccc 8
>ptc-miR472b MIMAT0002061 Populus trichocarpa miR472b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttccc 7
|||||||
Sbjct: 1 ttttccc 7
>ptc-miR472a MIMAT0002060 Populus trichocarpa miR472a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 ttttccc 7
|||||||
Sbjct: 1 ttttccc 7
>tch-miR-9771l MIMAT0036597 Tupaia chinensis miR-9771l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 6 tttccc 1
>tch-miR-9771a MIMAT0036469 Tupaia chinensis miR-9771a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>bra-miR9555a-3p MIMAT0035664 Brassica rapa miR9555a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttccc 7
||||||
Sbjct: 1 tttccc 6
>sly-miR9477-3p MIMAT0035472 Solanum lycopersicum miR9477-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 8 tttccc 3
>efu-miR-9330 MIMAT0035072 Eptesicus fuscus miR-9330
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttccc 7
||||||
Sbjct: 3 tttccc 8
>eca-miR-8920 MIMAT0034448 Equus caballus miR-8920
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttccc 7
||||||
Sbjct: 1 tttccc 6
>ppc-miR-8281-5p MIMAT0033065 Pristionchus pacificus miR-8281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 8 tttccc 3
>bdi-miR7708a-5p MIMAT0030133 Brachypodium distachyon
miR7708a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>tgu-miR-7644-3p MIMAT0029789 Taeniopygia guttata miR-7644-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 1 ttttcc 6
>lja-miR7545 MIMAT0029372 Lotus japonicus miR7545
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 8 tttccc 3
>gga-miR-7466-3p MIMAT0029087 Gallus gallus miR-7466-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 1 ttttcc 6
>mmu-miR-7211-5p MIMAT0028390 Mus musculus miR-7211-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttccc 7
||||||
Sbjct: 3 tttccc 8
>mml-miR-7164-5p MIMAT0028252 Macaca mulatta miR-7164-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>ssc-miR-7144-5p MIMAT0028163 Sus scrofa miR-7144-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttccc 7
||||||
Sbjct: 3 tttccc 8
>mmu-miR-7053-5p MIMAT0028010 Mus musculus miR-7053-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 8 tttccc 3
>mmu-miR-7009-3p MIMAT0027923 Mus musculus miR-7009-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mmu-miR-6959-5p MIMAT0027818 Mus musculus miR-6959-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 7 tttccc 2
>mmu-miR-6903-5p MIMAT0027706 Mus musculus miR-6903-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 8 tttccc 3
>hsa-miR-6739-5p MIMAT0027379 Homo sapiens miR-6739-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 7 tttccc 2
>hsa-miR-6733-5p MIMAT0027367 Homo sapiens miR-6733-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 7 tttccc 2
>gga-miR-6562-5p MIMAT0025832 Gallus gallus miR-6562-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 8 tttccc 3
>ptc-miR6444 MIMAT0025247 Populus trichocarpa miR6444
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>tca-miR-6014-3p MIMAT0023570 Tribolium castaneum miR-6014-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttccc 7
||||||
Sbjct: 3 tttccc 8
>osa-miR812u MIMAT0023273 Oryza sativa miR812u
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>osa-miR812t MIMAT0023272 Oryza sativa miR812t
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>ssl-miR395 MIMAT0022516 Salvia sclarea miR395
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 6 tttccc 1
>hsa-miR-5584-5p MIMAT0022283 Homo sapiens miR-5584-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 8 tttccc 3
>mtr-miR5558-5p MIMAT0022219 Medicago truncatula miR5558-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 1 ttttcc 6
>mtr-miR2592bn-3p MIMAT0022218 Medicago truncatula miR2592bn-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>mtr-miR2592bm-3p MIMAT0022214 Medicago truncatula miR2592bm-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>aca-miR-5412-3p MIMAT0022031 Anolis carolinensis miR-5412-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>aca-miR-5403 MIMAT0022016 Anolis carolinensis miR-5403
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>hsa-miR-5006-3p MIMAT0021034 Homo sapiens miR-5006-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttccc 7
||||||
Sbjct: 1 tttccc 6
>dme-miR-4962-5p MIMAT0020183 Drosophila melanogaster
miR-4962-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttccc 7
||||||
Sbjct: 1 tttccc 6
>hsa-miR-4755-5p MIMAT0019895 Homo sapiens miR-4755-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttccc 7
||||||
Sbjct: 1 tttccc 6
>osa-miR812n-3p MIMAT0019680 Oryza sativa miR812n-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>ame-miR-3740 MIMAT0018609 Apis mellifera miR-3740
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>ame-miR-3729 MIMAT0018596 Apis mellifera miR-3729
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>vvi-miR3632-3p MIMAT0018036 Vitis vinifera miR3632-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttccc 7
||||||
Sbjct: 1 tttccc 6
>ath-miR4221 MIMAT0017942 Arabidopsis thaliana miR4221
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 1 ttttcc 6
>cin-miR-4009a-5p MIMAT0016501 Ciona intestinalis miR-4009a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>rno-miR-3564 MIMAT0017837 Rattus norvegicus miR-3564
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 7 tttccc 2
>mmu-miR-3092-5p MIMAT0014905 Mus musculus miR-3092-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 8 tttccc 3
>eca-miR-684 MIMAT0012930 Equus caballus miR-684
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629g MIMAT0013369 Medicago truncatula miR2629g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629f MIMAT0013368 Medicago truncatula miR2629f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629c MIMAT0013367 Medicago truncatula miR2629c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629b MIMAT0013366 Medicago truncatula miR2629b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629e MIMAT0013365 Medicago truncatula miR2629e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629d MIMAT0013364 Medicago truncatula miR2629d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>mtr-miR2629a MIMAT0013363 Medicago truncatula miR2629a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
>osa-miR2103 MIMAT0010071 Oryza sativa miR2103
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttccc 7
||||||
Sbjct: 1 tttccc 6
>mmu-miR-1953 MIMAT0009424 Mus musculus miR-1953
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 tttccc 7
||||||
Sbjct: 7 tttccc 2
>mdv1-miR-M11-5p MIMAT0005982 Mareks disease miR-M11-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 1 ttttcc 6
>oan-miR-1422o-3p MIMAT0007104 Ornithorhynchus anatinus
miR-1422o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 8 ttttcc 3
>oan-miR-1422g-3p MIMAT0006890 Ornithorhynchus anatinus
miR-1422g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>oan-miR-1422e-3p MIMAT0006882 Ornithorhynchus anatinus
miR-1422e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 ttttcc 6
||||||
Sbjct: 6 ttttcc 1
>dme-miR-991-5p MIMAT0020890 Drosophila melanogaster miR-991-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 tttccc 7
||||||
Sbjct: 1 tttccc 6
>mmu-miR-684 MIMAT0003462 Mus musculus miR-684
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 ttttcc 6
||||||
Sbjct: 3 ttttcc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 112
Number of extensions: 98
Number of successful extensions: 73
Number of sequences better than 100.0: 73
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 73
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
