VIRmiRNA -A database of viral miRNA
Total number of Results for
KSHV are 30
VMR_ID miRNA Virus miRNA_Seq Length GC Seed analysis
miRBase
Seed analysis
VIRmiRNA
Experimental Method Target
(if any)
PMID
VMR_ID miRNA Virus miRNA_Seq Length GC Seed analysis
miRBase
Seed analysis
VIRmiRNA
Experimental Method Target
(if any)
PMID
VMR_0390kshv-miR-k10a_+1_5KSHVuuaguguuguccccccgagugg(c)23
61
 
 
 
 
Deep sequencingExpt.  Pred.
22100165
VMR_0391kshv-miR-k10b_+1_5KSHVuugguguuguccccccgagugg(c)23
65
 
 
 
 
Deep sequencingExpt.  Pred.
22100165
VMR_0393kshv-miR-k12-1*KSHVgcagcaccuguuuccugcaacc22
59
 
 
 
 
Solexa(NGS)Expt.  Pred.
15800047, 19889781, 20566670
VMR_0394kshv-miR-k12-10aKSHVuaguguuguccccccgaguggc22
64
 
 
 
 
Solexa(NGS)Expt.  Pred.
15800047, 15782219, 15994824, 19889781, 20566670
VMR_0396kshv-miR-k12-10bKSHVugguguuguccccccgaguggc22
68
 
 
 
 
Solexa(NGS)Expt.  Pred.
15800047, 19889781, 20566670
VMR_0397kshv-miR-k12-11KSHVuuaaugcuuagccuguguccga22
45
 
 
 
 
ClonedExpt.  Pred.
15782219, 19889781, 20566670, 22100165, 17881434, 18075594
VMR_0399kshv-miR-k12-12KSHVugggggagggugcccugguuga22
68
 
 
 
 
ClonedExpt.  Pred.
16540699, 19889781, 20566670
VMR_0402kshv-miR-k12-2*KSHVgaucuuccagggcuagagcug21
57
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670
VMR_0404kshv-miR-k12-3*KSHVucgcggucacagaaugugaca21
52
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670
VMR_0405kshv-miR-k12-3-3pKSHVucgcggucacagaaugugaca21
52
 
 
 
 
Northern blot analysis, RT-PCRExpt.  Pred.
17500590
VMR_0406kshv-miR-k12-4-3pKSHVuagaauacugaggccuagcuga22
45
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670, 22100165
VMR_0408kshv-miR-k12-5KSHVuaggaugccuggaacuugccggu23
57
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670
VMR_0410kshv-miR-k12-6-3pKSHVugaugguuuucgggcuguugag22
50
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670
VMR_0412kshv-miR-k12-7KSHVugaucccauguugcuggcgc20
60
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670
VMR_0415kshv-miR-k12-8KSHVcuaggcgcgacugagagagca21
62
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670
VMR_0417kshv-miR-k12-9KSHVcuggguauacgcagcugcguaa22
55
 
 
 
 
ClonedExpt.  Pred.
15800047, 20566670
VMR_0392kshv-miR-k12-1KSHVauuacaggaaacuggguguaagc23
43
 
 
 
 
Solexa(NGS)Expt.  Pred.
15800047, 19889781, 20566670, 22100165
VMR_0395kshv-miR-k12-10a*KSHVggcuuggggcgauaccaccacu22
64
 
 
 
 
Solexa(NGS)Expt.  Pred.
15800047, 19889781, 20566670
VMR_0398kshv-miR-k12-11*KSHVggucacagcuuaaacauuucuagg24
42
 
 
 
 
ClonedExpt.  Pred.
15782219, 19889781, 20566670
VMR_0400kshv-miR-k12-12*KSHVaaccaggccaccauuccucuccg23
61
 
 
 
 
ClonedExpt.  Pred.
16540699, 19889781, 20566670
VMR_0401kshv-miR-k12-2KSHVaacuguaguccgggucgaucug22
55
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670
VMR_0403kshv-miR-k12-3KSHVucacauucugaggacggcagcga23
57
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670
VMR_0407kshv-miR-k12-4-5pKSHVagcuaaaccgcaguacucuagg22
50
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670
VMR_0409kshv-miR-k12-5*KSHVagguagucccuggugcccuaagg23
61
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670
VMR_0411kshv-miR-k12-6-5pKSHVccagcagcaccuaauccaucgg22
59
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670
VMR_0413kshv-miR-k12-7*KSHVagcgccaccggacggggauuuaug24
63
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670
VMR_0414kshv-miR-k12-7-5pKSHVagcgccaccggacggggauuuaug24
63
 
 
 
 
RT-PCRExpt.  Pred.
21283761
VMR_0416kshv-miR-k12-8*KSHVacucccucacuaacgccccgcu22
64
 
 
 
 
ClonedExpt.  Pred.
15800047, 19889781, 20566670
VMR_0418kshv-miR-k12-9*KSHVacccagcugcguaaaccccgcu22
64
 
 
 
 
ClonedExpt.  Pred.
15800047, 20566670
VMR_0419kshv-miR-k3_+1_5KSHVaucacauucugaggacggcagcga24
54
 
 
 
 
Deep sequencingExpt.  Pred.
22100165