| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaaacatt | 8 | ||
| VMR_1242 | tumv-miR-s6 | 1 | ........ | 8 | 100 |
| VMR_0496 | mdv2-miR-m18-5p | 6 | ......__ | 1 | 75 |
| VMR_0489 | mdv2-miR-m15 | 8 | ......__ | 3 | 75 |
