| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaagcca | 7 | ||
| VMR_0057 | bmnpv-miR-3 | 2 | ....... | 8 | 100 |
| VMR_1231 | tumv-miR-s5 | 2 | ......_ | 7 | 85 |
| VMR_0505 | mdv2-miR-m22* | 8 | _...... | 3 | 85 |
| VMR_0084 | dev-miR-d24-3p | 8 | _...... | 3 | 85 |
