| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaagggt | 7 | ||
| VMR_0989 | rlcv-miR-rl1-20-5p | 2 | ....... | 8 | 100 |
| VMR_0794 | prv-miR-8-3p | 8 | _...... | 3 | 85 |
| VMR_0792 | prv-miR-8-3p | 7 | _...... | 2 | 85 |
| VMR_0791 | prv-miR-8-3p | 8 | _...... | 3 | 85 |
| VMR_0790 | prv-miR-8-3p | 8 | _...... | 3 | 85 |
| VMR_0789 | prv-miR-8-3p | 8 | _...... | 3 | 85 |
| VMR_0786 | prv-miR-8-3p | 8 | _...... | 3 | 85 |
| VMR_0784 | prv-miR-8-3p | 8 | _...... | 3 | 85 |
| VMR_0783 | prv-miR-8-3p | 8 | _...... | 3 | 85 |
| VMR_0781 | prv-miR-8-3p | 7 | _...... | 2 | 85 |
| VMR_0533 | mghv-miR-m1-12* | 1 | _...... | 6 | 85 |
| VMR_0340 | hsv2-miR-h7-5p | 1 | ......_ | 6 | 85 |
| VMR_0315 | hsv1-miR-h7 | 1 | ......_ | 6 | 85 |
