| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaatcaat | 8 | ||
| VMR_1301 | wssv-miR72 | 1 | ........ | 8 | 100 |
| VMR_1227 | tumv-miR-s46 | 1 | _......_ | 6 | 75 |
| VMR_1224 | tumv-miR-s43 | 1 | _......_ | 6 | 75 |
| VMR_0991 | rlcv-miR-rl1-21-5p | 6 | _......_ | 1 | 75 |
| VMR_0992 | rlcv-miR-rl1-21-5p | 6 | _......_ | 1 | 75 |
