| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaccaggc | 8 | ||
| VMR_0400 | kshv-miR-k12-12* | 1 | ........ | 8 | 100 |
| VMR_1200 | tumv-miR-s21 | 1 | _......_ | 6 | 75 |
| VMR_0164 | hbv-miR-b20-3p | 8 | ......__ | 3 | 75 |
| VMR_0163 | hbv-miR-b20-3p | 8 | ......__ | 3 | 75 |
| VMR_0160 | hbv-miR-b20-3p | 8 | ......__ | 3 | 75 |
| VMR_0015 | bfv-miR-bf2-3p | 1 | __...... | 6 | 75 |
| VMR_0013 | bfv-miR-bf2-3p | 1 | __...... | 6 | 75 |
| VMR_0012 | bfv-miR-bf2-3p | 1 | __...... | 6 | 75 |
| VMR_0010 | bfv-miR-bf2-3p | 1 | __...... | 6 | 75 |
