| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaccgctc | 8 | ||
| VMR_0235 | hcmv-miR-us25-1 | 1 | ........ | 8 | 100 |
| VMR_0072 | dev-miR-d17-3p | 2 | _....... | 8 | 87 |
| VMR_1295 | wssv-miR49 | 7 | _......_ | 2 | 75 |
| VMR_0238 | hcmv-miR-us25-2-5p | 6 | _......_ | 1 | 75 |
