| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aacctgtt | 8 | ||
| VMR_0617 | prv-miR-11-1 | 1 | ........ | 8 | 100 |
| VMR_0645 | prv-miR-11-1 | 1 | _....... | 7 | 87 |
| VMR_1181 | sv40-miR-s1-3p | 2 | __...... | 7 | 75 |
| VMR_0973 | rlcv-miR-rl1-1-5p | 2 | ......__ | 7 | 75 |
| VMR_0627 | prv-miR-11-1 | 3 | ......__ | 8 | 75 |
| VMR_0141 | ebv-miR-bhrf1-1 | 2 | ......__ | 7 | 75 |
