| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aactgtga | 8 | ||
| VMR_1223 | tumv-miR-s42 | 1 | ........ | 8 | 100 |
| VMR_0252 | hhv6b-miR-ro6-2 | 8 | ......a. | 1 | 87 |
| VMR_0401 | kshv-miR-k12-2 | 1 | ......__ | 6 | 75 |
| VMR_0398 | kshv-miR-k12-11* | 8 | __...... | 3 | 75 |
| VMR_0091 | dev-miR-d8-3p | 7 | ......__ | 2 | 75 |
