| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aagaagaa | 8 | ||
| VMR_1290 | wssv-miR214 | 1 | ........ | 8 | 100 |
| VMR_1280 | wssv-miR162 | 1 | ........ | 8 | 100 |
| VMR_1306 | wssv-miR9 | 1 | ......._ | 7 | 87 |
| VMR_1289 | wssv-miR212 | 7 | ......._ | 1 | 87 |
| VMR_1289 | wssv-miR212 | 8 | __...... | 3 | 75 |
| VMR_1233 | tumv-miR-s51 | 1 | ......._ | 7 | 87 |
| VMR_1213 | tumv-miR-s33 | 3 | __...... | 8 | 75 |
| VMR_0931 | rcmv-miR-r87-1 | 1 | __...... | 6 | 75 |
| VMR_0930 | rcmv-miR-r87-1 | 3 | __...... | 8 | 75 |
| VMR_0929 | rcmv-miR-r87-1 | 3 | __...... | 8 | 75 |
| VMR_0450 | mcv-miR-m1-5p | 3 | __...... | 8 | 75 |
| VMR_0383 | iltv-miR-i5 | 2 | __...... | 7 | 75 |
| VMR_0383 | iltv-miR-i5 | 3 | ......__ | 8 | 75 |
