| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aagcagtc | 8 | ||
| VMR_0250 | hhv6b-miR-ro6-1 | 1 | ........ | 8 | 100 |
| VMR_0975 | rlcv-miR-rl1-16-5p | 1 | ......g. | 8 | 87 |
| VMR_0580 | ohv2-miR-24-1 | 2 | _......_ | 7 | 75 |
| VMR_0560 | ohv2-miR-17-15 | 2 | _......_ | 7 | 75 |
| VMR_0462 | mdv1-miR-m2-3p | 8 | __...... | 3 | 75 |
| VMR_0442 | mcmv-miR-m59-1 | 3 | _......_ | 8 | 75 |
| VMR_0282 | hsv1-miR-425 | 2 | _......_ | 7 | 75 |
