| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aatcgccg | 8 | ||
| VMR_0577 | ohv2-miR-17-8 | 1 | ........ | 8 | 100 |
| VMR_0233 | hcmv-miR-us22-3p6 | 1 | __...... | 6 | 75 |
| VMR_0037 | bhv5-miR-b8 | 8 | __...... | 3 | 75 |
| VMR_0035 | bhv5-miR-b13 | 8 | __...... | 3 | 75 |
