| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aattgca | 7 | ||
| VMR_1088 | rrv-miR-rr1-13-5p | 2 | ....... | 8 | 100 |
| VMR_1086 | rrv-miR-rr1-13-5p | 1 | ....... | 7 | 100 |
| VMR_1085 | rrv-miR-rr1-13-5p | 2 | ....... | 8 | 100 |
| VMR_1084 | rrv-miR-rr1-13-5p | 2 | ....... | 8 | 100 |
| VMR_1087 | rrv-miR-rr1-13-5p | 1 | _...... | 6 | 85 |
