| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acaaatgt | 8 | ||
| VMR_0269 | hpv68-miR-h1 | 1 | ........ | 8 | 100 |
| VMR_1188 | tumv-miR-s10 | 3 | _......_ | 8 | 75 |
| VMR_0553 | mghv-miR-m1-9 | 8 | __...... | 3 | 75 |
