| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acatggcg | 8 | ||
| VMR_0022 | bhv1-miR-b10 | 1 | ........ | 8 | 100 |
| VMR_0941 | rhcmv-miR-rh156-1 | 1 | .t...... | 8 | 87 |
| VMR_1252 | tumv-miR-s69 | 7 | __...... | 2 | 75 |
| VMR_1170 | sgiv-miR-14 | 1 | ......__ | 6 | 75 |
| VMR_0243 | hcmv-miR-us4 | 3 | ......__ | 8 | 75 |
