| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | accaggc | 7 | ||
| VMR_0400 | kshv-miR-k12-12* | 2 | ....... | 8 | 100 |
| VMR_1200 | tumv-miR-s21 | 1 | ......_ | 6 | 85 |
| VMR_0015 | bfv-miR-bf2-3p | 1 | _...... | 6 | 85 |
| VMR_0013 | bfv-miR-bf2-3p | 1 | _...... | 6 | 85 |
| VMR_0012 | bfv-miR-bf2-3p | 1 | _...... | 6 | 85 |
| VMR_0010 | bfv-miR-bf2-3p | 1 | _...... | 6 | 85 |
