| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | accggtgt | 8 | ||
| VMR_0787 | prv-miR-8-3p | 1 | ........ | 8 | 100 |
| VMR_0787 | prv-miR-8-3p | 6 | ......__ | 1 | 75 |
| VMR_0793 | prv-miR-8-3p | 2 | ......._ | 8 | 87 |
| VMR_0793 | prv-miR-8-3p | 7 | ......__ | 2 | 75 |
| VMR_0785 | prv-miR-8-3p | 2 | ......._ | 8 | 87 |
| VMR_0785 | prv-miR-8-3p | 7 | ......__ | 2 | 75 |
| VMR_1052 | rlcv-miR-rl1-35-5p | 6 | _......_ | 1 | 75 |
| VMR_1051 | rlcv-miR-rl1-35-5p | 6 | _......_ | 1 | 75 |
| VMR_1050 | rlcv-miR-rl1-35-5p | 6 | _......_ | 1 | 75 |
| VMR_1028 | rlcv-miR-rl1-30-5p | 1 | ......__ | 6 | 75 |
| VMR_1028 | rlcv-miR-rl1-30-5p | 6 | ......__ | 1 | 75 |
| VMR_1027 | rlcv-miR-rl1-30-5p | 1 | ......__ | 6 | 75 |
| VMR_1027 | rlcv-miR-rl1-30-5p | 6 | ......__ | 1 | 75 |
| VMR_1026 | rlcv-miR-rl1-30-5p | 1 | ......__ | 6 | 75 |
| VMR_1026 | rlcv-miR-rl1-30-5p | 6 | ......__ | 1 | 75 |
| VMR_0892 | rcmv-miR-r111.1-1 | 8 | _......_ | 3 | 75 |
| VMR_0891 | rcmv-miR-r111.1-1 | 8 | _......_ | 3 | 75 |
| VMR_0889 | rcmv-miR-r111.1-1 | 8 | _......_ | 3 | 75 |
| VMR_0373 | hvt-miR-h7-3p | 1 | ......__ | 6 | 75 |
| VMR_0373 | hvt-miR-h7-3p | 6 | ......__ | 1 | 75 |
| VMR_0287 | hsv1-miR-59899 | 6 | _......_ | 1 | 75 |
