| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | accgtat | 7 | ||
| VMR_0473 | mdv1-miR-m5* | 2 | ....... | 8 | 100 |
| VMR_1107 | rrv-miR-rr1-2 | 7 | _...... | 2 | 85 |
| VMR_1106 | rrv-miR-rr1-2 | 7 | _...... | 2 | 85 |
| VMR_1105 | rrv-miR-rr1-2 | 6 | _...... | 1 | 85 |
| VMR_1104 | rrv-miR-rr1-2 | 7 | _...... | 2 | 85 |
| VMR_0960 | rlcv-miR-rl1-11-5p | 1 | _...... | 6 | 85 |
| VMR_0137 | ebv-miR-bart8 | 6 | ......_ | 1 | 85 |
