| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acctagtg | 8 | ||
| VMR_0127 | ebv-miR-bart3-5p* | 1 | ........ | 8 | 100 |
| VMR_0125 | ebv-miR-bart3* | 1 | ........ | 8 | 100 |
| VMR_1056 | rlcv-miR-rl1-5-5p | 2 | ......._ | 8 | 87 |
| VMR_1054 | rlcv-miR-rl1-4-5p | 1 | ......._ | 7 | 87 |
| VMR_0999 | rlcv-miR-rl1-23-5p | 7 | __...... | 2 | 75 |
| VMR_0572 | ohv2-miR-17-28 | 7 | ......__ | 2 | 75 |
| VMR_0219 | hbv-miR-b8-5p | 8 | __...... | 3 | 75 |
| VMR_0120 | ebv-miR-bart21-5p | 7 | __...... | 2 | 75 |
