| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acgctgag | 8 | ||
| VMR_0385 | iltv-miR-i6 | 1 | ........ | 8 | 100 |
| VMR_0699 | prv-miR-4-5p | 7 | ......._ | 1 | 87 |
| VMR_0271 | hsv1-miR-105617b | 6 | _......_ | 1 | 75 |
| VMR_0045 | blv-miR-b3-3p | 3 | ......__ | 8 | 75 |
