| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acggaga | 7 | ||
| VMR_0937 | rcmv-miR-r95.1-1 | 2 | ....... | 8 | 100 |
| VMR_0507 | mdv2-miR-m23* | 8 | ....... | 2 | 100 |
| VMR_0255 | hhv6b-miR-ro6-3-5p | 2 | ......_ | 7 | 85 |
| VMR_0028 | bhv1-miR-b6* | 8 | _...... | 3 | 85 |
