| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acggtgc | 7 | ||
| VMR_0961 | rlcv-miR-rl1-12-3p | 2 | ....... | 8 | 100 |
| VMR_0993 | rlcv-miR-rl1-22-3p | 7 | ......_ | 2 | 85 |
| VMR_1057 | rlcv-miR-rl1-6-3p | 8 | _...... | 3 | 85 |
| VMR_0892 | rcmv-miR-r111.1-1 | 7 | _...... | 2 | 85 |
| VMR_0891 | rcmv-miR-r111.1-1 | 7 | _...... | 2 | 85 |
| VMR_0889 | rcmv-miR-r111.1-1 | 7 | _...... | 2 | 85 |
| VMR_0758 | prv-miR-7-3p | 8 | ......_ | 3 | 85 |
| VMR_0757 | prv-miR-7-3p | 8 | ......_ | 3 | 85 |
| VMR_0756 | prv-miR-7-3p | 8 | ......_ | 3 | 85 |
| VMR_0754 | prv-miR-7-3p | 8 | ......_ | 3 | 85 |
| VMR_0104 | ebv-miR-bart1-3p | 8 | _...... | 3 | 85 |
