| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | actcgga | 7 | ||
| VMR_0936 | rcmv-miR-r91-1 | 2 | ....... | 8 | 100 |
| VMR_0935 | rcmv-miR-r91-1 | 3 | ......_ | 8 | 85 |
| VMR_0933 | rcmv-miR-r91-1 | 3 | ......_ | 8 | 85 |
| VMR_0342 | hsv2-miR-h9-5p | 1 | _...... | 6 | 85 |
| VMR_0026 | bhv1-miR-b5 | 1 | _...... | 6 | 85 |
