| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acttccc | 7 | ||
| VMR_0313 | hsv1-miR-h6-3p | 2 | ....... | 8 | 100 |
| VMR_0312 | hsv1-miR-h6 | 2 | ....... | 8 | 100 |
| VMR_0535 | mghv-miR-m1-13-5p | 7 | _...... | 2 | 85 |
| VMR_0527 | mghv-miR-m1-1* | 7 | ......_ | 2 | 85 |
