| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agaagtg | 7 | ||
| VMR_1275 | wssv-miR144 | 2 | ....... | 8 | 100 |
| VMR_1279 | wssv-miR16 | 3 | ......_ | 8 | 85 |
| VMR_1265 | tumv-miR-s80 | 2 | ......_ | 7 | 85 |
| VMR_0755 | prv-miR-7-3p | 8 | _...... | 3 | 85 |
| VMR_0527 | mghv-miR-m1-1* | 3 | _...... | 8 | 85 |
| VMR_0445 | mcmv-miR-m88-1 | 2 | ......_ | 7 | 85 |
| VMR_0313 | hsv1-miR-h6-3p | 6 | _...... | 1 | 85 |
| VMR_0312 | hsv1-miR-h6 | 6 | _...... | 1 | 85 |
