| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agaccgag | 8 | ||
| VMR_0254 | hhv6b-miR-ro6-3-3p | 1 | ........ | 8 | 100 |
| VMR_0256 | hhv6b-miR-ro6-4 | 1 | .t...... | 8 | 87 |
| VMR_0446 | mcmv-miR-m88-1* | 3 | _......_ | 8 | 75 |
| VMR_0437 | mcmv-miR-m23-1-5p | 6 | __...... | 1 | 75 |
| VMR_0238 | hcmv-miR-us25-2-5p | 8 | ......__ | 3 | 75 |
