| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agaggaga | 8 | ||
| VMR_0421 | mcmv-miR-m01-1 | 1 | ........ | 8 | 100 |
| VMR_0876 | prv-miR-9-5p | 1 | _....... | 7 | 87 |
| VMR_0875 | prv-miR-9-5p | 2 | _....... | 8 | 87 |
| VMR_0872 | prv-miR-9-5p | 1 | _....... | 7 | 87 |
| VMR_0871 | prv-miR-9-5p | 2 | _....... | 8 | 87 |
| VMR_0867 | prv-miR-9-5p | 1 | _....... | 7 | 87 |
| VMR_0866 | prv-miR-9-5p | 2 | _....... | 8 | 87 |
| VMR_0863 | prv-miR-9-5p | 1 | _....... | 7 | 87 |
| VMR_0862 | prv-miR-9-5p | 2 | _....... | 8 | 87 |
| VMR_0859 | prv-miR-9-5p | 1 | _....... | 7 | 87 |
| VMR_0858 | prv-miR-9-5p | 2 | _....... | 8 | 87 |
| VMR_0855 | prv-miR-9-5p | 1 | _....... | 7 | 87 |
| VMR_0852 | prv-miR-9-5p | 1 | _....... | 7 | 87 |
| VMR_0849 | prv-miR-9-5p | 1 | _....... | 7 | 87 |
| VMR_0846 | prv-miR-9-5p | 1 | _....... | 7 | 87 |
| VMR_0845 | prv-miR-9-5p | 1 | _....... | 7 | 87 |
| VMR_1278 | wssv-miR158 | 8 | __...... | 3 | 75 |
| VMR_0874 | prv-miR-9-5p | 3 | _......_ | 8 | 75 |
| VMR_0870 | prv-miR-9-5p | 3 | _......_ | 8 | 75 |
| VMR_0868 | prv-miR-9-5p | 1 | __...... | 6 | 75 |
| VMR_0865 | prv-miR-9-5p | 3 | _......_ | 8 | 75 |
| VMR_0861 | prv-miR-9-5p | 3 | _......_ | 8 | 75 |
| VMR_0857 | prv-miR-9-5p | 3 | _......_ | 8 | 75 |
| VMR_0854 | prv-miR-9-5p | 3 | _......_ | 8 | 75 |
| VMR_0851 | prv-miR-9-5p | 3 | _......_ | 8 | 75 |
| VMR_0848 | prv-miR-9-5p | 3 | _......_ | 8 | 75 |
| VMR_0543 | mghv-miR-m1-4 | 3 | _......_ | 8 | 75 |
| VMR_0386 | iltv-miR-i6* | 7 | __...... | 2 | 75 |
| VMR_0111 | ebv-miR-bart17-5p | 3 | ......__ | 8 | 75 |
| VMR_0067 | dev-miR-d1-3p | 6 | ......__ | 1 | 75 |
