| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agatccc | 7 | ||
| VMR_0475 | mdv1-miR-m6-3p | 2 | ....... | 8 | 100 |
| VMR_0582 | ohv2-miR-4 | 8 | ......_ | 3 | 85 |
| VMR_0412 | kshv-miR-k12-7 | 2 | _...... | 7 | 85 |
| VMR_0133 | ebv-miR-bart6-3p | 8 | _...... | 3 | 85 |
| VMR_0075 | dev-miR-d18-5p | 6 | _...... | 1 | 85 |
