| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aggaagtg | 8 | ||
| VMR_0527 | mghv-miR-m1-1* | 1 | ........ | 8 | 100 |
| VMR_0313 | hsv1-miR-h6-3p | 7 | _....... | 1 | 87 |
| VMR_0312 | hsv1-miR-h6 | 7 | _....... | 1 | 87 |
| VMR_1281 | wssv-miR164 | 6 | ......__ | 1 | 75 |
| VMR_1275 | wssv-miR144 | 3 | __...... | 8 | 75 |
| VMR_1201 | tumv-miR-s22 | 7 | ......__ | 2 | 75 |
| VMR_0755 | prv-miR-7-3p | 8 | __...... | 3 | 75 |
| VMR_0486 | mdv2-miR-m14-3p | 3 | ......__ | 8 | 75 |
| VMR_0053 | blv-miR-b5-5p | 1 | ......__ | 6 | 75 |
