| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aggagga | 7 | ||
| VMR_1277 | wssv-miR154-5p | 2 | ....... | 8 | 100 |
| VMR_0503 | mdv2-miR-m21* | 7 | ....... | 1 | 100 |
| VMR_0512 | mdv2-miR-m25-5p | 6 | ......_ | 1 | 85 |
| VMR_0298 | hsv1-miR-h16 | 3 | ......_ | 8 | 85 |
| VMR_0152 | hbv-miR-b14rc-3p | 1 | ......_ | 6 | 85 |
| VMR_0150 | hbv-miR-b14rc-3p | 1 | ......_ | 6 | 85 |
| VMR_0149 | hbv-miR-b14rc-3p | 1 | ......_ | 6 | 85 |
| VMR_0054 | blv-miR-b5-5p | 1 | ......_ | 6 | 85 |
