| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aggcaaac | 8 | ||
| VMR_0546 | mghv-miR-m1-5* | 1 | ........ | 8 | 100 |
| VMR_0556 | ohv2-miR-17-11 | 8 | __...... | 3 | 75 |
| VMR_0308 | hsv1-miR-h4-3p | 7 | ......__ | 2 | 75 |
| VMR_0283 | hsv1-miR-470 | 7 | ......__ | 2 | 75 |
