| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agggtac | 7 | ||
| VMR_0533 | mghv-miR-m1-12* | 2 | ....... | 8 | 100 |
| VMR_0877 | pyv-miR-3p | 3 | _...... | 8 | 85 |
| VMR_0518 | mdv2-miR-m28* | 3 | ......_ | 8 | 85 |
| VMR_0106 | ebv-miR-bart14* | 6 | ......_ | 1 | 85 |
