| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtatagt | 8 | ||
| VMR_0268 | hpv45-miR-h1 | 1 | ........ | 8 | 100 |
| VMR_0059 | bmnpv-miR-5 | 1 | .c...... | 8 | 87 |
| VMR_0059 | bmnpv-miR-5 | 8 | .c...... | 1 | 87 |
| VMR_0382 | iltv-miR-i4 | 3 | _......_ | 8 | 75 |
