| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtggaac | 8 | ||
| VMR_1256 | tumv-miR-s72 | 1 | ........ | 8 | 100 |
| VMR_1258 | tumv-miR-s74 | 7 | _......_ | 2 | 75 |
| VMR_0909 | rcmv-miR-r111.2-5 | 6 | _......_ | 1 | 75 |
| VMR_0741 | prv-miR-5-5p | 1 | ......__ | 6 | 75 |
| VMR_0740 | prv-miR-5-5p | 3 | ......__ | 8 | 75 |
| VMR_0735 | prv-miR-5-5p | 1 | ......__ | 6 | 75 |
| VMR_0734 | prv-miR-5-5p | 2 | ......__ | 7 | 75 |
| VMR_0733 | prv-miR-5-5p | 3 | ......__ | 8 | 75 |
| VMR_0730 | prv-miR-5-5p | 1 | ......__ | 6 | 75 |
| VMR_0729 | prv-miR-5-5p | 3 | ......__ | 8 | 75 |
| VMR_0726 | prv-miR-5-5p | 2 | ......__ | 7 | 75 |
| VMR_0725 | prv-miR-5-5p | 3 | ......__ | 8 | 75 |
| VMR_0722 | prv-miR-5-5p | 1 | ......__ | 6 | 75 |
| VMR_0720 | prv-miR-5-5p | 3 | ......__ | 8 | 75 |
| VMR_0755 | prv-miR-7-3p | 6 | ......__ | 1 | 75 |
| VMR_0714 | prv-miR-5 | 3 | ......__ | 8 | 75 |
| VMR_0314 | hsv1-miR-h6-5p | 2 | _......_ | 7 | 75 |
| VMR_0237 | hcmv-miR-us25-2-3p | 7 | ......__ | 2 | 75 |
