| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agttcaca | 8 | ||
| VMR_1180 | sgiv-miR-homohsv | 1 | ........ | 8 | 100 |
| VMR_0335 | hsv2-miR-h4-5p | 2 | ......._ | 8 | 87 |
| VMR_0285 | hsv1-miR-55593 | 1 | _......_ | 6 | 75 |
