| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atagtgaa | 8 | ||
| VMR_1247 | tumv-miR-s64 | 1 | ........ | 8 | 100 |
| VMR_1219 | tumv-miR-s39 | 1 | ........ | 8 | 100 |
| VMR_0520 | mdv2-miR-m29-3p | 2 | ......._ | 8 | 87 |
| VMR_0220 | hbv-miR-b8-5p | 8 | _....... | 2 | 87 |
| VMR_0219 | hbv-miR-b8-5p | 7 | _....... | 1 | 87 |
| VMR_0999 | rlcv-miR-rl1-23-5p | 6 | _......_ | 1 | 75 |
| VMR_0217 | hbv-miR-b8-5p | 8 | __...... | 3 | 75 |
| VMR_0214 | hbv-miR-b8-5p | 8 | __...... | 3 | 75 |
| VMR_0120 | ebv-miR-bart21-5p | 6 | _......_ | 1 | 75 |
