| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atcaaca | 7 | ||
| VMR_1227 | tumv-miR-s46 | 2 | ....... | 8 | 100 |
| VMR_1224 | tumv-miR-s43 | 2 | ....... | 8 | 100 |
| VMR_0266 | hpv16-miR-h6 | 1 | ....... | 7 | 100 |
| VMR_1245 | tumv-miR-s62 | 7 | _...... | 2 | 85 |
