| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atcacatt | 8 | ||
| VMR_0419 | kshv-miR-k3_+1_5 | 1 | ........ | 8 | 100 |
| VMR_0553 | mghv-miR-m1-9 | 1 | _....... | 7 | 87 |
| VMR_0403 | kshv-miR-k12-3 | 1 | _....... | 7 | 87 |
| VMR_1253 | tumv-miR-s7 | 8 | __...... | 3 | 75 |
| VMR_0571 | ohv2-miR-17-27 | 3 | __...... | 8 | 75 |
