| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atccccct | 8 | ||
| VMR_0046 | blv-miR-b3-5p | 1 | ........ | 8 | 100 |
| VMR_0738 | prv-miR-5-5p | 7 | ......__ | 2 | 75 |
| VMR_0727 | prv-miR-5-5p | 7 | ......__ | 2 | 75 |
| VMR_0723 | prv-miR-5-5p | 7 | ......__ | 2 | 75 |
| VMR_0843 | prv-miR-9-3p | 2 | _......_ | 7 | 75 |
| VMR_0842 | prv-miR-9-3p | 3 | _......_ | 8 | 75 |
| VMR_0840 | prv-miR-9-3p | 2 | _......_ | 7 | 75 |
| VMR_0839 | prv-miR-9-3p | 3 | _......_ | 8 | 75 |
| VMR_0837 | prv-miR-9-3p | 2 | _......_ | 7 | 75 |
| VMR_0836 | prv-miR-9-3p | 3 | _......_ | 8 | 75 |
| VMR_0834 | prv-miR-9-3p | 3 | _......_ | 8 | 75 |
| VMR_0832 | prv-miR-9-3p | 3 | _......_ | 8 | 75 |
| VMR_0540 | mghv-miR-m1-2-5p | 8 | __...... | 3 | 75 |
| VMR_0399 | kshv-miR-k12-12 | 7 | _......_ | 2 | 75 |
| VMR_0231 | hcmv-miR-ul70-3p | 6 | ......__ | 1 | 75 |
| VMR_0133 | ebv-miR-bart6-3p | 7 | ......__ | 2 | 75 |
| VMR_0074 | dev-miR-d18-3p | 3 | ......__ | 8 | 75 |
