| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atcgcacg | 8 | ||
| VMR_1208 | tumv-miR-s29 | 1 | ........ | 8 | 100 |
| VMR_1103 | rrv-miR-rr1-1-5p | 2 | ......._ | 8 | 87 |
| VMR_0302 | hsv1-miR-h2* | 1 | _....... | 7 | 87 |
| VMR_0420 | kun-miR-1 | 8 | _......_ | 3 | 75 |
| VMR_1102 | rrv-miR-rr1-1-5p | 3 | ......__ | 8 | 75 |
| VMR_1066 | rrv-miR-rr1-1 | 3 | ......__ | 8 | 75 |
| VMR_1139 | rrv-miR-rr1-7-3p | 1 | __...... | 6 | 75 |
| VMR_1138 | rrv-miR-rr1-7-3p | 1 | __...... | 6 | 75 |
| VMR_1137 | rrv-miR-rr1-7-3p | 1 | __...... | 6 | 75 |
| VMR_1136 | rrv-miR-rr1-7-3p | 1 | __...... | 6 | 75 |
| VMR_1024 | rlcv-miR-rl1-3 | 1 | _......_ | 6 | 75 |
| VMR_0969 | rlcv-miR-rl1-14-3p | 1 | _......_ | 6 | 75 |
| VMR_0717 | prv-miR-5-5p | 8 | __...... | 3 | 75 |
| VMR_0296 | hsv1-miR-h14-5p | 3 | _......_ | 8 | 75 |
