| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atctcac | 7 | ||
| VMR_1238 | tumv-miR-s56 | 2 | ....... | 8 | 100 |
| VMR_1228 | tumv-miR-s47 | 7 | _...... | 2 | 85 |
| VMR_0823 | prv-miR-8-5p | 6 | _...... | 1 | 85 |
| VMR_0815 | prv-miR-8-5p | 6 | _...... | 1 | 85 |
| VMR_0811 | prv-miR-8-5p | 6 | _...... | 1 | 85 |
| VMR_0807 | prv-miR-8-5p | 6 | _...... | 1 | 85 |
| VMR_0806 | prv-miR-8-5p | 7 | _...... | 2 | 85 |
| VMR_0805 | prv-miR-8-5p | 8 | _...... | 3 | 85 |
| VMR_0801 | prv-miR-8-5p | 7 | _...... | 2 | 85 |
| VMR_0798 | prv-miR-8-5p | 7 | _...... | 2 | 85 |
| VMR_0656 | prv-miR-1-3p | 1 | _...... | 6 | 85 |
| VMR_0655 | prv-miR-1-3p | 1 | _...... | 6 | 85 |
| VMR_0654 | prv-miR-1-3p | 2 | _...... | 7 | 85 |
| VMR_0653 | prv-miR-1-3p | 1 | _...... | 6 | 85 |
| VMR_0652 | prv-miR-1-3p | 2 | _...... | 7 | 85 |
| VMR_0651 | prv-miR-1-3p | 1 | _...... | 6 | 85 |
| VMR_0534 | mghv-miR-m1-13-3p | 2 | ......_ | 7 | 85 |
| VMR_0364 | hvt-miR-h18-3p | 7 | ......_ | 2 | 85 |
