| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atctctcg | 8 | ||
| VMR_0375 | hvt-miR-h8 | 1 | ........ | 8 | 100 |
| VMR_0939 | rhcmv-miR-rh106-1 | 1 | .a...... | 8 | 87 |
| VMR_0915 | rcmv-miR-r1-2 | 3 | _......_ | 8 | 75 |
| VMR_0914 | rcmv-miR-r1-2 | 3 | _......_ | 8 | 75 |
| VMR_0831 | prv-miR-8-loop | 7 | _......_ | 2 | 75 |
| VMR_0830 | prv-miR-8-loop | 7 | _......_ | 2 | 75 |
| VMR_0829 | prv-miR-8-loop | 7 | _......_ | 2 | 75 |
| VMR_0828 | prv-miR-8-loop | 7 | _......_ | 2 | 75 |
| VMR_0826 | prv-miR-8-loop | 6 | _......_ | 1 | 75 |
| VMR_0825 | prv-miR-8-loop | 7 | _......_ | 2 | 75 |
| VMR_0824 | prv-miR-8-loop | 7 | _......_ | 2 | 75 |
| VMR_0823 | prv-miR-8-5p | 8 | _......_ | 3 | 75 |
| VMR_0815 | prv-miR-8-5p | 8 | _......_ | 3 | 75 |
| VMR_0811 | prv-miR-8-5p | 8 | _......_ | 3 | 75 |
| VMR_0807 | prv-miR-8-5p | 8 | _......_ | 3 | 75 |
| VMR_0587 | ohv2-miR-73-1 | 3 | ......__ | 8 | 75 |
| VMR_0261 | hiv1-miR-tar-5p | 1 | _......_ | 6 | 75 |
| VMR_0229 | hcmv-miR-ul59-5p | 3 | _......_ | 8 | 75 |
